Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC124312.4-201ENST00000605533 310 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AP003355.3-201ENST00000623465 114 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC010401.2-201ENST00000575137 4934 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC009852.2-201ENST00000567898 485 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC015802.5-201ENST00000607478 399 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AP003485.2-201ENST00000623636 610 ntBASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS13AQ96RL7 AC104623.2-202ENST00000623477 4002 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 MTHFD2P2-201ENST00000407725 247 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AL513124.1-201ENST00000450410 614 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AP002884.2-201ENST00000471647 395 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 Xist_exon4.1-201ENST00000615964 126 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AC062016.1-201ENST00000355719 319 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 HMGB1P5-202ENST00000451497 985 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AC107993.1-201ENST00000591343 684 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 VN1R78P-201ENST00000597393 564 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 Y_RNA.238-201ENST00000364441 102 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 BX842559.1-201ENST00000419615 532 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AL109933.2-201ENST00000452651 260 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AL512310.1-201ENST00000548639 172 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AC023161.2-201ENST00000551218 780 ntBASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS13AQ96RL7 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 RNA5SP424-201ENST00000390988 115 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 BTF3P9-201ENST00000418784 283 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AC239809.1-201ENST00000450470 217 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AC008694.2-201ENST00000517591 306 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AC127502.3-201ENST00000636170 1206 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 PSMC1P13-201ENST00000458195 985 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 CCDC75P1-201ENST00000469247 791 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 RPL21P7-201ENST00000557463 483 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AL360157.1-201ENST00000565962 87 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 AC022106.2-201ENST00000620114 757 ntBASIC3.44□□□□□ -1.86
VPS13AQ96RL7 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS13AQ96RL7 RNA5SP235-201ENST00000365411 114 ntBASIC3.43□□□□□ -1.86
VPS13AQ96RL7 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.43□□□□□ -1.86
VPS13AQ96RL7 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS13AQ96RL7 RPL7P36-201ENST00000444633 681 ntBASIC3.43□□□□□ -1.86
VPS13AQ96RL7 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS13AQ96RL7 AC092868.3-201ENST00000560515 784 ntBASIC3.43□□□□□ -1.86
VPS13AQ96RL7 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms