Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 AGGF1P6-201ENST00000569213 976 ntBASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 AC093227.2-201ENST00000589357 285 ntBASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 AC010857.1-201ENST00000606398 594 ntBASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 AP006248.2-201ENST00000623309 592 ntBASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
CCDC112Q8NEF3 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 RNA5SP399-201ENST00000364003 117 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 ST13P16-201ENST00000401760 781 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AL022722.2-201ENST00000402519 180 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 RNU6-628P-201ENST00000410675 107 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 HSPE1P12-201ENST00000412576 301 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 RCC2P2-201ENST00000422174 918 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AL138787.1-202ENST00000437804 898 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 RANP8-201ENST00000444720 713 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC239367.2-201ENST00000447309 705 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 RPL23AP14-201ENST00000468281 468 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC020593.1-201ENST00000507399 299 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC026784.1-201ENST00000507986 352 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC084824.1-201ENST00000550917 1005 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AL356274.1-201ENST00000617064 410 ntBASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
CCDC112Q8NEF3 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 RN7SKP44-201ENST00000363602 316 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 MT-RNR1-201ENST00000389680 954 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AL445189.1-201ENST00000405722 338 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AL136131.1-201ENST00000406079 803 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AL450992.3-201ENST00000413192 568 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC114814.2-201ENST00000419195 485 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 DPY19L1P2-201ENST00000426647 915 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 RPL12P46-201ENST00000436610 195 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 OR52Y1P-201ENST00000452418 828 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 RPL7P48-201ENST00000461513 746 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 RPS7P7-201ENST00000463499 571 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 RPL7L1P8-201ENST00000469911 741 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC020898.1-201ENST00000474167 787 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC084198.1-201ENST00000477747 402 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC108475.1-201ENST00000507880 950 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 CYCSP29-201ENST00000533731 318 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC091516.1-201ENST00000549191 703 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 MIR4738-201ENST00000579134 87 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 MIR4425-201ENST00000580572 84 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 AL365503.1-201ENST00000605247 905 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 OR5AC4P-202ENST00000642086 985 ntBASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC112Q8NEF3 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 AL121657.1-201ENST00000327215 531 ntBASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 RNU1-132P-201ENST00000364300 164 ntBASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 AL590704.1-201ENST00000402856 794 ntBASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 SNORA57.3-201ENST00000411095 141 ntBASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 AC098592.2-201ENST00000413158 265 ntBASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 OR5BE1P-201ENST00000425977 939 ntBASIC4.22□□□□□ -1.73
CCDC112Q8NEF3 MOB1AP1-201ENST00000430903 535 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms