Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC079880.2-201ENST00000603790 1213 ntBASIC3.87□□□□□ -1.79
LIM2P55344 AC018618.2-201ENST00000604770 446 ntBASIC3.87□□□□□ -1.79
LIM2P55344 AC114878.2-201ENST00000604863 1251 ntBASIC3.87□□□□□ -1.79
LIM2P55344 AC023043.4-201ENST00000612081 449 ntBASIC3.87□□□□□ -1.79
LIM2P55344 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LIM2P55344 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC3.87□□□□□ -1.79
LIM2P55344 MIR6810-201ENST00000622701 70 ntBASIC3.87□□□□□ -1.79
LIM2P55344 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.87□□□□□ -1.79
LIM2P55344 MIR492-201ENST00000638676 116 ntBASIC3.87□□□□□ -1.79
LIM2P55344 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
LIM2P55344 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
LIM2P55344 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LIM2P55344 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.87□□□□□ -1.79
LIM2P55344 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
LIM2P55344 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
LIM2P55344 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
LIM2P55344 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.86□□□□□ -1.79
LIM2P55344 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIM2P55344 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.86□□□□□ -1.79
LIM2P55344 SNORA60-201ENST00000362396 134 ntBASIC3.86□□□□□ -1.79
LIM2P55344 SNORD35B-201ENST00000363660 87 ntBASIC3.86□□□□□ -1.79
LIM2P55344 SNORA70.2-201ENST00000364506 135 ntBASIC3.86□□□□□ -1.79
LIM2P55344 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIM2P55344 BMS1P3-201ENST00000372011 932 ntBASIC3.86□□□□□ -1.79
LIM2P55344 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIM2P55344 ENSAP1-201ENST00000392855 326 ntBASIC3.86□□□□□ -1.79
LIM2P55344 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.86□□□□□ -1.79
LIM2P55344 AL022722.2-201ENST00000402519 180 ntBASIC3.86□□□□□ -1.79
LIM2P55344 RNU6-603P-201ENST00000411403 107 ntBASIC3.86□□□□□ -1.79
LIM2P55344 EIF4A1P3-201ENST00000411521 244 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AC010385.1-201ENST00000412374 256 ntBASIC3.86□□□□□ -1.79
LIM2P55344 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.86□□□□□ -1.79
LIM2P55344 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIM2P55344 AL121882.1-201ENST00000422893 417 ntBASIC3.86□□□□□ -1.79
LIM2P55344 RSL24D1P6-201ENST00000426934 401 ntBASIC3.86□□□□□ -1.79
LIM2P55344 VDAC1P6-201ENST00000430062 855 ntBASIC3.86□□□□□ -1.79
LIM2P55344 PTP4A1P3-201ENST00000433661 420 ntBASIC3.86□□□□□ -1.79
LIM2P55344 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 GSTA7P-201ENST00000438425 448 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AL353093.1-201ENST00000441292 436 ntBASIC3.86□□□□□ -1.79
LIM2P55344 RPS4XP4-201ENST00000443195 763 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AC097499.1-201ENST00000444277 208 ntBASIC3.86□□□□□ -1.79
LIM2P55344 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.86□□□□□ -1.79
LIM2P55344 AC111193.1-201ENST00000504097 155 ntBASIC3.86□□□□□ -1.79
LIM2P55344 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.86□□□□□ -1.79
LIM2P55344 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.86□□□□□ -1.79
LIM2P55344 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 MTND1P6-201ENST00000523621 946 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.86□□□□□ -1.79
LIM2P55344 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.86□□□□□ -1.79
LIM2P55344 AP003049.1-201ENST00000529418 457 ntBASIC3.86□□□□□ -1.79
LIM2P55344 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.86□□□□□ -1.79
LIM2P55344 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.86□□□□□ -1.79
LIM2P55344 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
LIM2P55344 AL136520.1-202ENST00000555494 763 ntBASIC3.86□□□□□ -1.79
LIM2P55344 PARP1P2-201ENST00000556806 195 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 AC018552.3-201ENST00000567416 561 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AC079171.1-201ENST00000568788 914 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.86□□□□□ -1.79
LIM2P55344 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 AL451044.1-201ENST00000604867 238 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AC007423.1-201ENST00000605009 627 ntBASIC3.86□□□□□ -1.79
LIM2P55344 AL445493.3-201ENST00000619568 477 ntBASIC3.86□□□□□ -1.79
LIM2P55344 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LIM2P55344 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
LIM2P55344 USP9YP4-201ENST00000424401 1745 ntBASIC3.86□□□□□ -1.79
LIM2P55344 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
LIM2P55344 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
LIM2P55344 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.86□□□□□ -1.79
LIM2P55344 MARK2P15-201ENST00000432204 2186 ntBASIC3.86□□□□□ -1.79
LIM2P55344 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.86□□□□□ -1.79
LIM2P55344 AC006042.3-201ENST00000454684 1469 ntBASIC3.86□□□□□ -1.79
LIM2P55344 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.85□□□□□ -1.79
LIM2P55344 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LIM2P55344 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LIM2P55344 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LIM2P55344 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.85□□□□□ -1.79
LIM2P55344 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
LIM2P55344 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.85□□□□□ -1.79
LIM2P55344 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
LIM2P55344 RNU4-44P-201ENST00000363050 141 ntBASIC3.85□□□□□ -1.79
LIM2P55344 Y_RNA.110-201ENST00000363220 99 ntBASIC3.85□□□□□ -1.79
LIM2P55344 RNA5SP130-201ENST00000364431 114 ntBASIC3.85□□□□□ -1.79
LIM2P55344 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LIM2P55344 SNORA3C-201ENST00000408792 125 ntBASIC3.85□□□□□ -1.79
LIM2P55344 RAB28P1-201ENST00000411517 641 ntBASIC3.85□□□□□ -1.79
LIM2P55344 HSPE1P12-201ENST00000412576 301 ntBASIC3.85□□□□□ -1.79
LIM2P55344 OR8G2P-201ENST00000412796 908 ntBASIC3.85□□□□□ -1.79
LIM2P55344 TPT1P2-201ENST00000413105 503 ntBASIC3.85□□□□□ -1.79
LIM2P55344 AC019070.1-201ENST00000415008 1024 ntBASIC3.85□□□□□ -1.79
LIM2P55344 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
LIM2P55344 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.85□□□□□ -1.79
LIM2P55344 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.85□□□□□ -1.79
LIM2P55344 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.85□□□□□ -1.79
LIM2P55344 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms