Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL158062.1-201ENST00000619632 745 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 RNA5SP196-201ENST00000625967 102 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 CDRT1-208ENST00000630868 794 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA1P55317 AC008725.1-201ENST00000605123 2263 ntBASIC3.56□□□□□ -1.84
FOXA1P55317 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
FOXA1P55317 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA1P55317 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA1P55317 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
FOXA1P55317 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA1P55317 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA1P55317 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA1P55317 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA1P55317 RPS4XP5-202ENST00000449995 1334 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
FOXA1P55317 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA1P55317 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
FOXA1P55317 AL049693.1-201ENST00000402760 611 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 SNORA3.3-201ENST00000408712 125 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA1P55317 PPIAP21-201ENST00000464473 501 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 BLNK-209ENST00000495266 440 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA1P55317 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.55□□□□□ -1.84
FOXA1P55317 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA1P55317 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.55□□□□□ -1.84
FOXA1P55317 AC021146.1-201ENST00000511202 716 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA1P55317 AC022616.2-201ENST00000523185 300 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 TOMM20P2-201ENST00000540082 421 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
FOXA1P55317 AC122134.1-201ENST00000565664 1104 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA1P55317 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA1P55317 AC087499.8-201ENST00000578406 226 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA1P55317 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.55□□□□□ -1.84
FOXA1P55317 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA1P55317 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA1P55317 AL139286.1-201ENST00000604465 483 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 RNU1-30P-201ENST00000606575 163 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 AC016957.2-201ENST00000616998 848 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 Z73965.1-201ENST00000623412 2297 ntBASIC3.55□□□□□ -1.84
FOXA1P55317 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA1P55317 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.55□□□□□ -1.84
FOXA1P55317 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA1P55317 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
FOXA1P55317 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC3.54□□□□□ -1.84
FOXA1P55317 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.54□□□□□ -1.84
FOXA1P55317 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA1P55317 MIR30B-201ENST00000384850 88 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AL590609.2-201ENST00000421430 368 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA1P55317 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA1P55317 RPL7P28-201ENST00000437739 740 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.54□□□□□ -1.84
FOXA1P55317 SETD6P1-201ENST00000444575 317 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AC084357.1-201ENST00000473404 255 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AC018797.3-201ENST00000513388 1241 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA1P55317 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA1P55317 AL121766.1-201ENST00000547436 487 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA1P55317 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA1P55317 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA1P55317 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA1P55317 AC005255.1-201ENST00000593748 216 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AC025946.2-201ENST00000603398 234 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA1P55317 MIR6875-201ENST00000617506 72 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 AC015813.6-201ENST00000624409 5808 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.54□□□□□ -1.84
FOXA1P55317 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA1P55317 CEP170P1-201ENST00000502249 4587 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA1P55317 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
FOXA1P55317 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA1P55317 CUL4AP1-201ENST00000514750 1863 ntBASIC3.54□□□□□ -1.84
FOXA1P55317 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
FOXA1P55317 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
FOXA1P55317 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
FOXA1P55317 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA1P55317 MTHFD2P2-201ENST00000407725 247 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.53□□□□□ -1.84
FOXA1P55317 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA1P55317 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.53□□□□□ -1.84
FOXA1P55317 TRGV7-201ENST00000427089 353 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AL591419.1-201ENST00000427423 339 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA1P55317 OR52Y1P-201ENST00000452418 828 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.53□□□□□ -1.84
FOXA1P55317 AL161747.1-201ENST00000480068 358 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 AC016687.1-201ENST00000482574 353 ntBASIC3.53□□□□□ -1.84
FOXA1P55317 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms