Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 OR11H5P-202ENST00000641612 1325 ntBASIC6.13□□□□□ -1.43
LIG3P49916 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 RBMY1HP-201ENST00000382759 1389 ntBASIC6.13□□□□□ -1.43
LIG3P49916 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 QRSL1P1-201ENST00000400977 1540 ntBASIC6.13□□□□□ -1.43
LIG3P49916 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 USP9YP4-201ENST00000424401 1745 ntBASIC6.13□□□□□ -1.43
LIG3P49916 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG3P49916 AC006484.1-201ENST00000435086 1884 ntBASIC6.13□□□□□ -1.43
LIG3P49916 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.13□□□□□ -1.43
LIG3P49916 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG3P49916 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG3P49916 AC020656.2-201ENST00000613291 5309 ntBASIC6.12□□□□□ -1.43
LIG3P49916 RNA5SP375-201ENST00000362975 119 ntBASIC6.12□□□□□ -1.43
LIG3P49916 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG3P49916 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG3P49916 RN7SKP263-201ENST00000411194 309 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC245096.1-201ENST00000413104 546 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AL096829.1-201ENST00000413677 457 ntBASIC6.12□□□□□ -1.43
LIG3P49916 METTL15P3-201ENST00000415522 1221 ntBASIC6.12□□□□□ -1.43
LIG3P49916 SPA17P1-201ENST00000416656 452 ntBASIC6.12□□□□□ -1.43
LIG3P49916 BX295541.1-201ENST00000417774 250 ntBASIC6.12□□□□□ -1.43
LIG3P49916 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG3P49916 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG3P49916 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
LIG3P49916 ANKRD62P1-201ENST00000434304 1623 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC009961.2-201ENST00000435771 251 ntBASIC6.12□□□□□ -1.43
LIG3P49916 ARPC3P1-201ENST00000437218 533 ntBASIC6.12□□□□□ -1.43
LIG3P49916 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.12□□□□□ -1.43
LIG3P49916 FTLP8-201ENST00000446770 267 ntBASIC6.12□□□□□ -1.43
LIG3P49916 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 ARPC3P5-201ENST00000448802 534 ntBASIC6.12□□□□□ -1.43
LIG3P49916 RNU7-136P-201ENST00000458819 69 ntBASIC6.12□□□□□ -1.43
LIG3P49916 DAP3-209ENST00000465375 729 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG3P49916 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 RPL21P6-201ENST00000479171 504 ntBASIC6.12□□□□□ -1.43
LIG3P49916 RPL15P21-201ENST00000495592 567 ntBASIC6.12□□□□□ -1.43
LIG3P49916 MTND4P12-201ENST00000498999 1377 ntBASIC6.12□□□□□ -1.43
LIG3P49916 STMN1P2-201ENST00000508435 439 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG3P49916 RNU6-507P-201ENST00000516045 100 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG3P49916 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 AL121594.2-201ENST00000541658 472 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG3P49916 HSPA8P14-201ENST00000552265 1805 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.12□□□□□ -1.43
LIG3P49916 AL157687.1-201ENST00000554853 619 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AL049779.3-201ENST00000557141 606 ntBASIC6.12□□□□□ -1.43
LIG3P49916 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG3P49916 AC009852.2-201ENST00000567898 485 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG3P49916 AC012146.2-201ENST00000576545 416 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG3P49916 RNU4ATAC-201ENST00000580972 127 ntBASIC6.12□□□□□ -1.43
LIG3P49916 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.12□□□□□ -1.43
LIG3P49916 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG3P49916 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
LIG3P49916 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG3P49916 SUGT1P3-202ENST00000604259 383 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC019072.1-201ENST00000604535 1551 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 AL365503.1-201ENST00000605247 905 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AL390208.1-201ENST00000605885 644 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC104260.1-201ENST00000616660 539 ntBASIC6.12□□□□□ -1.43
LIG3P49916 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG3P49916 AP000550.3-201ENST00000637734 379 ntBASIC6.12□□□□□ -1.43
LIG3P49916 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG3P49916 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.12□□□□□ -1.43
LIG3P49916 CASC19-280ENST00000642102 1351 ntBASIC6.12□□□□□ -1.43
LIG3P49916 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG3P49916 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
LIG3P49916 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
LIG3P49916 BRAFP1-201ENST00000445336 2703 ntBASIC6.12□□□□□ -1.43
LIG3P49916 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC6.11□□□□□ -1.43
LIG3P49916 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.11□□□□□ -1.43
LIG3P49916 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
LIG3P49916 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 AL022578.1-201ENST00000439330 1433 ntBASIC6.11□□□□□ -1.43
LIG3P49916 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG3P49916 AC008033.1-201ENST00000216407 1162 ntBASIC6.11□□□□□ -1.43
LIG3P49916 RNU6-984P-201ENST00000363236 109 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms