Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
CUX1P39880 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC6.01□□□□□ -1.45
CUX1P39880 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CUX1P39880 CPD-202ENST00000543464 4007 ntTSL 2 BASIC6.01□□□□□ -1.45
CUX1P39880 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CUX1P39880 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CUX1P39880 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
CUX1P39880 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC6□□□□□ -1.45
CUX1P39880 AL022322.2-201ENST00000624072 20397 ntBASIC6□□□□□ -1.45
CUX1P39880 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CUX1P39880 IL6-203ENST00000401651 539 ntTSL 2 BASIC6□□□□□ -1.45
CUX1P39880 RN7SKP111-201ENST00000410349 271 ntBASIC6□□□□□ -1.45
CUX1P39880 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC6□□□□□ -1.45
CUX1P39880 MTCO1P45-201ENST00000431457 267 ntBASIC6□□□□□ -1.45
CUX1P39880 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC6□□□□□ -1.45
CUX1P39880 AC010655.1-201ENST00000449336 292 ntBASIC6□□□□□ -1.45
CUX1P39880 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC6□□□□□ -1.45
CUX1P39880 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC6□□□□□ -1.45
CUX1P39880 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC6□□□□□ -1.45
CUX1P39880 AC090136.1-201ENST00000520009 240 ntBASIC6□□□□□ -1.45
CUX1P39880 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6□□□□□ -1.45
CUX1P39880 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC6□□□□□ -1.45
CUX1P39880 AL033523.1-201ENST00000605153 153 ntBASIC6□□□□□ -1.45
CUX1P39880 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC6□□□□□ -1.45
CUX1P39880 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CUX1P39880 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CUX1P39880 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
CUX1P39880 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
CUX1P39880 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CUX1P39880 RNU1-108P-201ENST00000362556 161 ntBASIC5.99□□□□□ -1.45
CUX1P39880 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC5.99□□□□□ -1.45
CUX1P39880 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC5.99□□□□□ -1.45
CUX1P39880 RN7SL504P-201ENST00000494496 287 ntBASIC5.99□□□□□ -1.45
CUX1P39880 AL606834.2-201ENST00000602954 668 ntBASIC5.99□□□□□ -1.45
CUX1P39880 MIR6852-201ENST00000621699 66 ntBASIC5.99□□□□□ -1.45
CUX1P39880 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
CUX1P39880 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
CUX1P39880 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CUX1P39880 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC5.99□□□□□ -1.45
CUX1P39880 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CUX1P39880 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CUX1P39880 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CUX1P39880 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CUX1P39880 RPL7P44-201ENST00000424827 742 ntBASIC5.99□□□□□ -1.45
CUX1P39880 HIGD1AP12-201ENST00000427832 281 ntBASIC5.99□□□□□ -1.45
CUX1P39880 UBE2V1P1-201ENST00000430836 445 ntBASIC5.99□□□□□ -1.45
CUX1P39880 AC087650.1-201ENST00000431445 468 ntBASIC5.99□□□□□ -1.45
CUX1P39880 AC236972.1-201ENST00000433225 199 ntBASIC5.99□□□□□ -1.45
CUX1P39880 AL671855.1-201ENST00000446875 1203 ntBASIC5.99□□□□□ -1.45
CUX1P39880 UBE2DNL-203ENST00000474922 222 ntBASIC5.99□□□□□ -1.45
CUX1P39880 TRBV12-2-201ENST00000489763 344 ntBASIC5.99□□□□□ -1.45
CUX1P39880 RPL7P23-201ENST00000493874 747 ntBASIC5.99□□□□□ -1.45
CUX1P39880 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC5.99□□□□□ -1.45
CUX1P39880 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.99□□□□□ -1.45
CUX1P39880 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.99□□□□□ -1.45
CUX1P39880 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC5.99□□□□□ -1.45
CUX1P39880 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CUX1P39880 LINC01109-201ENST00000603837 3081 ntBASIC5.98□□□□□ -1.45
CUX1P39880 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CUX1P39880 AL353743.1-202ENST00000431724 1695 ntBASIC5.98□□□□□ -1.45
CUX1P39880 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CUX1P39880 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
CUX1P39880 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
CUX1P39880 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CUX1P39880 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CUX1P39880 AL034403.1-201ENST00000399414 885 ntBASIC5.98□□□□□ -1.45
CUX1P39880 LIPT1P1-201ENST00000415870 1186 ntBASIC5.98□□□□□ -1.45
CUX1P39880 OR5AW1P-201ENST00000426334 1006 ntBASIC5.98□□□□□ -1.45
CUX1P39880 FTH1P24-201ENST00000503502 462 ntBASIC5.98□□□□□ -1.45
CUX1P39880 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC5.98□□□□□ -1.45
CUX1P39880 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC5.98□□□□□ -1.45
CUX1P39880 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.98□□□□□ -1.45
CUX1P39880 AC127502.3-201ENST00000636170 1206 ntBASIC5.98□□□□□ -1.45
CUX1P39880 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CUX1P39880 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
CUX1P39880 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CUX1P39880 MFSD8-233ENST00000641482 4860 ntBASIC5.97□□□□□ -1.45
CUX1P39880 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CUX1P39880 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.97□□□□□ -1.45
CUX1P39880 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
CUX1P39880 GNG5P1-201ENST00000255500 204 ntBASIC5.97□□□□□ -1.45
CUX1P39880 Y_RNA.510-201ENST00000384511 114 ntBASIC5.97□□□□□ -1.45
CUX1P39880 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CUX1P39880 AL357075.1-201ENST00000404107 726 ntBASIC5.97□□□□□ -1.45
CUX1P39880 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5.97□□□□□ -1.45
CUX1P39880 RNA5SP306-201ENST00000411087 107 ntBASIC5.97□□□□□ -1.45
CUX1P39880 ANKRD20A10P-201ENST00000457591 1515 ntBASIC5.97□□□□□ -1.45
CUX1P39880 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.97□□□□□ -1.45
CUX1P39880 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.97□□□□□ -1.45
CUX1P39880 AC006445.1-201ENST00000491925 405 ntBASIC5.97□□□□□ -1.45
CUX1P39880 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC5.97□□□□□ -1.45
CUX1P39880 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC5.97□□□□□ -1.45
CUX1P39880 AC097504.1-201ENST00000515103 2415 ntBASIC5.97□□□□□ -1.45
CUX1P39880 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC5.97□□□□□ -1.45
CUX1P39880 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.97□□□□□ -1.45
CUX1P39880 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.97□□□□□ -1.45
CUX1P39880 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.97□□□□□ -1.45
CUX1P39880 MIR7851-201ENST00000610611 160 ntBASIC5.97□□□□□ -1.45
CUX1P39880 AL732618.1-201ENST00000623251 301 ntBASIC5.97□□□□□ -1.45
CUX1P39880 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms