Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC091834.1-201ENST00000614543 472 ntBASIC5.17□□□□□ -1.58
MSX2P35548 AC063943.3-201ENST00000615562 356 ntBASIC5.17□□□□□ -1.58
MSX2P35548 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
MSX2P35548 AC009704.2-201ENST00000618739 483 ntBASIC5.17□□□□□ -1.58
MSX2P35548 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
MSX2P35548 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
MSX2P35548 MRE11P1-201ENST00000464884 2127 ntBASIC5.17□□□□□ -1.58
MSX2P35548 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
MSX2P35548 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX2P35548 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
MSX2P35548 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC5.16□□□□□ -1.58
MSX2P35548 RNU6-433P-201ENST00000363216 104 ntBASIC5.16□□□□□ -1.58
MSX2P35548 RNU1-146P-201ENST00000364015 165 ntBASIC5.16□□□□□ -1.58
MSX2P35548 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 MIR1284-201ENST00000408337 120 ntBASIC5.16□□□□□ -1.58
MSX2P35548 RPL17P12-201ENST00000413391 526 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 AC138393.2-201ENST00000414742 246 ntBASIC5.16□□□□□ -1.58
MSX2P35548 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 MTCYBP24-201ENST00000420387 1106 ntBASIC5.16□□□□□ -1.58
MSX2P35548 RPL7P30-201ENST00000420888 709 ntBASIC5.16□□□□□ -1.58
MSX2P35548 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.16□□□□□ -1.58
MSX2P35548 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
MSX2P35548 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 MTCO3P21-201ENST00000430791 643 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 TRIM60P3Y-201ENST00000432201 673 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX2P35548 AC006335.2-201ENST00000437993 330 ntBASIC5.16□□□□□ -1.58
MSX2P35548 ATP5LP2-201ENST00000440646 311 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AL022238.1-201ENST00000442557 355 ntBASIC5.16□□□□□ -1.58
MSX2P35548 NFU1P2-201ENST00000448700 469 ntBASIC5.16□□□□□ -1.58
MSX2P35548 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 AC016724.1-201ENST00000453215 421 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 SNORD42A-201ENST00000459584 64 ntBASIC5.16□□□□□ -1.58
MSX2P35548 RPS3AP17-201ENST00000472594 777 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC023424.1-201ENST00000496058 459 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX2P35548 AC112484.3-201ENST00000505910 329 ntBASIC5.16□□□□□ -1.58
MSX2P35548 ARL2BPP6-201ENST00000512757 439 ntBASIC5.16□□□□□ -1.58
MSX2P35548 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX2P35548 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX2P35548 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC5.16□□□□□ -1.58
MSX2P35548 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 RNU6-507P-201ENST00000516045 100 ntBASIC5.16□□□□□ -1.58
MSX2P35548 RNA5SP340-201ENST00000517132 107 ntBASIC5.16□□□□□ -1.58
MSX2P35548 IGKV2D-10-201ENST00000520194 281 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX2P35548 TOMM20P1-201ENST00000534518 427 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 AC137768.1-201ENST00000549998 553 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX2P35548 RPA2P1-201ENST00000556557 721 ntBASIC5.16□□□□□ -1.58
MSX2P35548 SULT1C2P2-201ENST00000562517 294 ntBASIC5.16□□□□□ -1.58
MSX2P35548 BPTFP1-201ENST00000579209 492 ntBASIC5.16□□□□□ -1.58
MSX2P35548 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX2P35548 AC006504.3-201ENST00000586818 523 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.16□□□□□ -1.58
MSX2P35548 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.16□□□□□ -1.58
MSX2P35548 C8orf59P2-201ENST00000603441 271 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC006363.1-201ENST00000603806 463 ntBASIC5.16□□□□□ -1.58
MSX2P35548 TAS2R6P-201ENST00000605022 826 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC005084.1-201ENST00000605160 304 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC107214.2-201ENST00000608204 634 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC104458.1-201ENST00000608243 463 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AC244107.2-201ENST00000611773 76 ntBASIC5.16□□□□□ -1.58
MSX2P35548 AL353726.1-201ENST00000614041 1000 ntBASIC5.16□□□□□ -1.58
MSX2P35548 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 MIR6721-201ENST00000617181 87 ntBASIC5.16□□□□□ -1.58
MSX2P35548 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC5.16□□□□□ -1.58
MSX2P35548 SAMMSON-227ENST00000642114 1199 ntBASIC5.16□□□□□ -1.58
MSX2P35548 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
MSX2P35548 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 AC100778.3-201ENST00000580060 1750 ntBASIC5.16□□□□□ -1.58
MSX2P35548 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
MSX2P35548 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
MSX2P35548 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
MSX2P35548 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
MSX2P35548 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
MSX2P35548 AC114786.1-201ENST00000512892 1415 ntBASIC5.15□□□□□ -1.58
MSX2P35548 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.15□□□□□ -1.58
MSX2P35548 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
MSX2P35548 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
MSX2P35548 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms