Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SCN4AP35499 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SCN4AP35499 VN1R8P-201ENST00000407739 893 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 RPL7AP73-201ENST00000413490 353 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 AC087650.1-201ENST00000431445 468 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.49□□□□□ -1.69
SCN4AP35499 MTND6P5-201ENST00000448266 512 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.49□□□□□ -1.69
SCN4AP35499 RN7SL271P-201ENST00000487601 295 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SCN4AP35499 RPL5P23-201ENST00000496040 868 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 AC139783.2-201ENST00000504847 1145 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 IGKV2-38-201ENST00000517443 247 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SCN4AP35499 OR4A12P-201ENST00000530847 918 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.49□□□□□ -1.69
SCN4AP35499 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.49□□□□□ -1.69
SCN4AP35499 AC010591.1-201ENST00000603941 649 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.49□□□□□ -1.69
SCN4AP35499 AC079684.1-201ENST00000621405 437 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 HCFC2P1-201ENST00000392864 1592 ntBASIC4.48□□□□□ -1.69
SCN4AP35499 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SCN4AP35499 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SCN4AP35499 UBA52P6-201ENST00000399822 382 ntBASIC4.48□□□□□ -1.69
SCN4AP35499 AGGF1P3-201ENST00000493675 1213 ntBASIC4.48□□□□□ -1.69
SCN4AP35499 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.48□□□□□ -1.69
SCN4AP35499 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.48□□□□□ -1.69
SCN4AP35499 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.48□□□□□ -1.69
SCN4AP35499 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.48□□□□□ -1.69
SCN4AP35499 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.48□□□□□ -1.69
SCN4AP35499 AC006077.1-201ENST00000604746 343 ntBASIC4.48□□□□□ -1.69
SCN4AP35499 YPEL5P2-201ENST00000605553 359 ntBASIC4.48□□□□□ -1.69
SCN4AP35499 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.48□□□□□ -1.69
SCN4AP35499 ATE1-AS1-202ENST00000636460 506 ntBASIC4.48□□□□□ -1.69
SCN4AP35499 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.48□□□□□ -1.69
SCN4AP35499 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SCN4AP35499 HSPD1P11-201ENST00000508643 1702 ntBASIC4.48□□□□□ -1.69
SCN4AP35499 AL365440.1-201ENST00000436135 2167 ntBASIC4.48□□□□□ -1.69
SCN4AP35499 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
SCN4AP35499 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
SCN4AP35499 MUC2-202ENST00000613187 4845 ntBASIC4.47□□□□□ -1.69
SCN4AP35499 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.47□□□□□ -1.69
SCN4AP35499 AL603766.1-201ENST00000407763 664 ntBASIC4.47□□□□□ -1.69
SCN4AP35499 SNORA3C-201ENST00000408792 125 ntBASIC4.47□□□□□ -1.69
SCN4AP35499 AL831737.1-201ENST00000441288 271 ntBASIC4.47□□□□□ -1.69
SCN4AP35499 AC025554.1-201ENST00000505641 188 ntBASIC4.47□□□□□ -1.69
SCN4AP35499 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.47□□□□□ -1.69
SCN4AP35499 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.47□□□□□ -1.69
SCN4AP35499 SMG1P4-204ENST00000523028 4131 ntBASIC4.47□□□□□ -1.69
SCN4AP35499 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SCN4AP35499 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCN4AP35499 AC083843.2-201ENST00000568248 6253 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 OR10J6P-201ENST00000289731 930 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.46□□□□□ -1.69
SCN4AP35499 RNU4-35P-201ENST00000362588 141 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.46□□□□□ -1.69
SCN4AP35499 HSFY4P-201ENST00000415994 1181 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 AL035458.1-201ENST00000433096 585 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.46□□□□□ -1.69
SCN4AP35499 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.46□□□□□ -1.69
SCN4AP35499 RNU2-27P-201ENST00000516185 142 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 SNORA70.18-201ENST00000516696 98 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 MTCO3P22-201ENST00000603219 784 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 AC015813.4-201ENST00000610469 179 ntBASIC4.46□□□□□ -1.69
SCN4AP35499 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.46□□□□□ -1.69
SCN4AP35499 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.46□□□□□ -1.69
SCN4AP35499 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
SCN4AP35499 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.46□□□□□ -1.7
SCN4AP35499 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SCN4AP35499 RNA5SP306-201ENST00000411087 107 ntBASIC4.46□□□□□ -1.7
SCN4AP35499 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.46□□□□□ -1.7
SCN4AP35499 RBMY2UP-201ENST00000453474 324 ntBASIC4.46□□□□□ -1.7
SCN4AP35499 PRELID3BP6-201ENST00000503839 571 ntBASIC4.46□□□□□ -1.7
SCN4AP35499 AC084759.1-201ENST00000561168 290 ntBASIC4.46□□□□□ -1.7
SCN4AP35499 AC112198.2-201ENST00000426589 6996 ntBASIC4.46□□□□□ -1.7
SCN4AP35499 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
SCN4AP35499 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SCN4AP35499 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SCN4AP35499 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SCN4AP35499 XKRY2-202ENST00000623874 1581 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 XKRY-202ENST00000624960 1581 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 SNORA38.1-201ENST00000364172 131 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 RNA5SP104-201ENST00000410989 118 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 MAPRE1P3-201ENST00000435438 796 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 RPL12P46-201ENST00000436610 195 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 RPS27AP1-201ENST00000475545 471 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.45□□□□□ -1.7
SCN4AP35499 OR7E13P-201ENST00000526052 910 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 AC103843.2-201ENST00000530523 682 ntBASIC4.45□□□□□ -1.7
SCN4AP35499 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.45□□□□□ -1.7
SCN4AP35499 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms