Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC006042.3-201ENST00000454684 1469 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 AL031985.3-201ENST00000565390 2449 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN4P29074 AC083899.2-201ENST00000423285 1376 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PTPN4P29074 PNPT1P2-201ENST00000456768 2050 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN4P29074 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN4P29074 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN4P29074 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN4P29074 METTL21EP-201ENST00000298105 713 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 RNU1-87P-201ENST00000363727 170 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
PTPN4P29074 MIR659-201ENST00000384963 97 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 RPL23AP48-201ENST00000406913 488 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 USP9YP19-201ENST00000412165 485 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN4P29074 RPS12P10-201ENST00000427031 377 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.28□□□□□ -1.72
PTPN4P29074 RPS29P17-201ENST00000430795 166 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN4P29074 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN4P29074 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN4P29074 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN4P29074 HMGB1P16-201ENST00000447155 540 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PTPN4P29074 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN4P29074 NUTF2P7-201ENST00000453086 375 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 AC006517.1-201ENST00000480485 328 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN4P29074 AC146944.2-203ENST00000502493 354 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 AC139495.1-202ENST00000513164 354 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 RN7SKP21-201ENST00000516503 220 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 MTND2P7-201ENST00000521337 640 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 AC004923.2-201ENST00000529649 369 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN4P29074 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN4P29074 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN4P29074 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN4P29074 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN4P29074 MIR3138-201ENST00000585238 82 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 AC115085.1-201ENST00000588924 229 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 ZNF92P3-201ENST00000596594 954 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN4P29074 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN4P29074 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN4P29074 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN4P29074 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN4P29074 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
PTPN4P29074 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN4P29074 AC025125.1-201ENST00000624743 1922 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN4P29074 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN4P29074 FAM35DP-201ENST00000323387 2712 ntBASIC4.28□□□□□ -1.72
PTPN4P29074 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PTPN4P29074 AL627171.1-201ENST00000618845 1308 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 RNA5SP502-201ENST00000362694 119 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 SNORA11-201ENST00000408789 128 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 AC011933.1-201ENST00000413334 321 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 TMSB10P2-201ENST00000416049 131 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 LINC01881-201ENST00000416103 412 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.27□□□□□ -1.73
PTPN4P29074 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN4P29074 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.27□□□□□ -1.73
PTPN4P29074 AC017099.1-201ENST00000448261 1028 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN4P29074 AL353718.1-201ENST00000451028 517 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 RPL37P3-201ENST00000456825 293 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 AC116533.1-201ENST00000459748 321 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN4P29074 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN4P29074 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.27□□□□□ -1.73
PTPN4P29074 AC010476.1-201ENST00000519111 851 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 IGLVIV-53-201ENST00000520107 367 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.27□□□□□ -1.73
PTPN4P29074 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
PTPN4P29074 AL109766.1-201ENST00000555080 552 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN4P29074 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.27□□□□□ -1.73
PTPN4P29074 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.27□□□□□ -1.73
PTPN4P29074 AP001033.2-201ENST00000609701 1003 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN4P29074 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN4P29074 AC114781.5-201ENST00000615297 108 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 MIR1264-201ENST00000616374 69 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 AC068724.3-201ENST00000625906 87 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN4P29074 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN4P29074 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN4P29074 CPHL1P-201ENST00000461341 3407 ntBASIC4.27□□□□□ -1.73
PTPN4P29074 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN4P29074 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN4P29074 GTF2H2B-203ENST00000508065 1432 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms