Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 RNU11-4P-201ENST00000391149 133 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC108032.1-201ENST00000416706 207 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 OR5BE1P-201ENST00000425977 939 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC005912.1-201ENST00000495392 255 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC113398.2-201ENST00000507630 558 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 SMARCE1P4-201ENST00000523647 241 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC022968.1-201ENST00000567372 442 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 MIR3160-1-201ENST00000577972 85 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AC110743.1-201ENST00000584870 478 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 AL034351.1-201ENST00000605288 668 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 MIR486-1-201ENST00000612171 68 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 AL713922.2-201ENST00000619384 716 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 OR5BE1P-202ENST00000641168 1176 ntBASIC3.04□□□□□ -1.92
HLA-DMBP28068 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HLA-DMBP28068 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DMBP28068 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AL139811.1-201ENST00000424779 2299 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 SNORA57.1-201ENST00000391227 145 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 RPS27AP11-201ENST00000402798 447 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 Z98941.1-201ENST00000407764 100 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 RNU6-628P-201ENST00000410675 107 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 RHEBP3-201ENST00000411920 351 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 HSPE1P12-201ENST00000412576 301 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 AL590806.1-201ENST00000415818 853 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 USP12PY-201ENST00000427677 1064 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC073069.1-201ENST00000428657 441 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 NPM1P34-201ENST00000428821 893 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 BTF3P10-201ENST00000433415 495 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 RNA5SP246-201ENST00000458909 119 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 RPL7P1-201ENST00000468161 747 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 RPL7P9-201ENST00000468715 747 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 RN7SL604P-201ENST00000492589 296 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 RNU4-18P-201ENST00000516751 149 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 OR4C2P-201ENST00000530855 1064 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 VN1R84P-201ENST00000593697 235 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 VN1R85P-201ENST00000601587 426 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC010857.1-201ENST00000606398 594 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 MIR7151-201ENST00000617477 60 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC145207.9-201ENST00000623802 325 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC112484.5-201ENST00000624189 228 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.03□□□□□ -1.92
HLA-DMBP28068 MIR492-201ENST00000638676 116 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 MTCO1P14-201ENST00000441695 1559 ntBASIC3.03□□□□□ -1.92
HLA-DMBP28068 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HLA-DMBP28068 AC066616.2-201ENST00000559334 1481 ntBASIC3.03□□□□□ -1.93
HLA-DMBP28068 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HLA-DMBP28068 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HLA-DMBP28068 AC106871.1-201ENST00000568324 3102 ntBASIC3.02□□□□□ -1.93
HLA-DMBP28068 SPATA2P1-201ENST00000431223 2055 ntBASIC3.02□□□□□ -1.93
HLA-DMBP28068 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.02□□□□□ -1.93
HLA-DMBP28068 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HLA-DMBP28068 SPRR2C-201ENST00000290702 219 ntBASIC3.02□□□□□ -1.93
HLA-DMBP28068 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms