Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNA5SP258-201ENST00000362750 119 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 RN7SKP103-201ENST00000363848 320 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 RNU6-95P-201ENST00000384697 107 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 RNU6-1140P-201ENST00000410517 106 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 RPL31P45-201ENST00000419532 356 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 RPL7P37-201ENST00000425095 738 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 MTND6P12-201ENST00000428247 522 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 CALM2P2-201ENST00000428512 440 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 MRPS18BP2-201ENST00000434310 759 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 AL645939.3-201ENST00000435408 225 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC7.21□□□□□ -1.26
COL9A1P20849 AC104698.1-201ENST00000435671 276 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC7.21□□□□□ -1.26
COL9A1P20849 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC7.21□□□□□ -1.26
COL9A1P20849 NOTCH2P1-201ENST00000443481 624 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 AC007998.1-201ENST00000474156 672 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 RN7SL273P-201ENST00000481561 299 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 RN7SL413P-201ENST00000482700 297 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 SNORA14.1-201ENST00000516113 141 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC7.21□□□□□ -1.26
COL9A1P20849 AC006205.1-201ENST00000538067 389 ntTSL 2 BASIC7.21□□□□□ -1.26
COL9A1P20849 APAF1-207ENST00000547743 651 ntTSL 3 BASIC7.21□□□□□ -1.26
COL9A1P20849 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC7.21□□□□□ -1.26
COL9A1P20849 AC015720.2-201ENST00000567709 334 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 AC024619.4-201ENST00000580924 316 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC7.21□□□□□ -1.26
COL9A1P20849 AL161423.1-201ENST00000613700 262 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 AL118522.2-201ENST00000616045 615 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 AC091953.5-201ENST00000622919 233 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 ZNF438-202ENST00000361310 3144 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC7.21□□□□□ -1.26
COL9A1P20849 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC7.21□□□□□ -1.26
COL9A1P20849 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 AL136985.3-201ENST00000637377 2219 ntTSL 5 BASIC7.21□□□□□ -1.26
COL9A1P20849 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
COL9A1P20849 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
COL9A1P20849 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 SGMS1-AS1-201ENST00000443374 12400 ntTSL 4 BASIC7.21□□□□□ -1.26
COL9A1P20849 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC7.21□□□□□ -1.26
COL9A1P20849 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 PRRG1-201ENST00000378628 4493 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 ARHGAP42P5-201ENST00000548856 2936 ntBASIC7.21□□□□□ -1.26
COL9A1P20849 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL9A1P20849 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 XRCC6P5-201ENST00000435236 1795 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC7.2□□□□□ -1.26
COL9A1P20849 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 C9orf131-201ENST00000312292 3409 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 OVCH1-201ENST00000318184 3405 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC7.2□□□□□ -1.26
COL9A1P20849 ZNF846-202ENST00000586293 1621 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 CASC19-284ENST00000642142 1868 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 LRRC8B-206ENST00000640258 8034 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 ZNF235-201ENST00000291182 3188 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 RNU4-50P-201ENST00000364361 141 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 RNU6-550P-201ENST00000391057 101 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 AL136372.1-201ENST00000403060 228 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 HMGN1P24-201ENST00000412282 298 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 RPLP0P7-201ENST00000416050 667 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 SRSF1P1-201ENST00000424058 520 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 TRBV26-201ENST00000456572 344 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 RN7SL717P-201ENST00000478343 297 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 RPL23AP8-201ENST00000479812 475 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 AC020893.1-201ENST00000502452 580 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC7.2□□□□□ -1.26
COL9A1P20849 SSX6-203ENST00000509958 336 ntTSL 3 BASIC7.2□□□□□ -1.26
COL9A1P20849 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC7.2□□□□□ -1.26
COL9A1P20849 SNORD46.2-201ENST00000516021 102 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 RNU6-1332P-201ENST00000516666 104 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 RN7SKP11-201ENST00000517018 287 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 IGLC4-201ENST00000517690 248 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC7.2□□□□□ -1.26
COL9A1P20849 RPL10P18-201ENST00000519384 309 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC7.2□□□□□ -1.26
COL9A1P20849 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC7.2□□□□□ -1.26
COL9A1P20849 MED21-206ENST00000546323 575 ntTSL 3 BASIC7.2□□□□□ -1.26
COL9A1P20849 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC7.2□□□□□ -1.26
COL9A1P20849 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 AC233702.7-202ENST00000582941 211 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 RPL29P33-201ENST00000587474 316 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 ASCC1-201ENST00000317126 1501 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
COL9A1P20849 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 AC108751.5-201ENST00000492880 1336 ntBASIC7.2□□□□□ -1.26
COL9A1P20849 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
COL9A1P20849 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL9A1P20849 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
COL9A1P20849 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms