Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC6.17□□□□□ -1.42
SOX4Q06945 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC6.17□□□□□ -1.42
SOX4Q06945 MIR4489-201ENST00000578869 62 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 MIR1273E-201ENST00000581165 102 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 AC011840.5-201ENST00000582125 771 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 VN1R80P-201ENST00000597126 338 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 AL391646.1-201ENST00000603860 190 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 AC093788.1-201ENST00000609356 927 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 AC069234.4-201ENST00000621276 412 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 AL158801.5-201ENST00000623123 465 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 AC005618.4-201ENST00000625053 554 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 MVP-219ENST00000629059 120 ntTSL 5 BASIC6.17□□□□□ -1.42
SOX4Q06945 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 TTC41P-205ENST00000551270 3963 ntBASIC6.17□□□□□ -1.42
SOX4Q06945 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
SOX4Q06945 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.17□□□□□ -1.42
SOX4Q06945 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
SOX4Q06945 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX4Q06945 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 DBF4P1-201ENST00000412976 1892 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 SNORA51.2-201ENST00000364595 132 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 RNA5SP30-201ENST00000365552 115 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 Y_RNA.481-201ENST00000384373 102 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 MIR130A-201ENST00000385274 89 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 RNU6-908P-201ENST00000410160 94 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 RNU4-64P-201ENST00000410795 131 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 NIPA2P1-201ENST00000426223 976 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC6.16□□□□□ -1.42
SOX4Q06945 AC109583.1-201ENST00000432156 268 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 RPS3AP38-201ENST00000435889 763 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AC012075.1-201ENST00000436549 580 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AL390119.1-201ENST00000440329 312 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 SLC31A1P1-201ENST00000451221 567 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 RNU1-88P-201ENST00000459274 128 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.16□□□□□ -1.42
SOX4Q06945 AC078899.1-201ENST00000521432 1185 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AP003080.1-202ENST00000526526 915 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 RGS5-219ENST00000528019 512 ntTSL 4 BASIC6.16□□□□□ -1.42
SOX4Q06945 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 AC068587.4-201ENST00000533893 186 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 DCN-210ENST00000547568 823 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 NACA-211ENST00000548563 827 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 IGBP1P1-201ENST00000554337 1009 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AL845331.3-202ENST00000562856 261 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AC037471.2-201ENST00000564941 598 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 MIR3176-201ENST00000582210 90 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 MIR4307-201ENST00000582802 84 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 NRBF2P1-201ENST00000587407 859 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX4Q06945 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC6.16□□□□□ -1.42
SOX4Q06945 AC090948.2-201ENST00000607363 564 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 AC097468.3-201ENST00000607956 456 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.16□□□□□ -1.42
SOX4Q06945 ARHGAP42P1-201ENST00000507474 1976 ntBASIC6.16□□□□□ -1.42
SOX4Q06945 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.16□□□□□ -1.42
SOX4Q06945 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX4Q06945 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
SOX4Q06945 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX4Q06945 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SOX4Q06945 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
SOX4Q06945 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
SOX4Q06945 DMD-211ENST00000378707 7410 ntTSL 5 BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms