Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC016957.2-201ENST00000616998 848 ntBASIC4.51□□□□□ -1.69
HMGCS2P54868 AL590410.1-201ENST00000617925 333 ntBASIC4.51□□□□□ -1.69
HMGCS2P54868 AC091953.5-201ENST00000622919 233 ntBASIC4.51□□□□□ -1.69
HMGCS2P54868 AP002967.1-201ENST00000624203 539 ntBASIC4.51□□□□□ -1.69
HMGCS2P54868 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
HMGCS2P54868 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HMGCS2P54868 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HMGCS2P54868 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HMGCS2P54868 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HMGCS2P54868 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HMGCS2P54868 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HMGCS2P54868 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HMGCS2P54868 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HMGCS2P54868 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HMGCS2P54868 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HMGCS2P54868 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HMGCS2P54868 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HMGCS2P54868 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HMGCS2P54868 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HMGCS2P54868 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HMGCS2P54868 MIR7-1-201ENST00000384871 110 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HMGCS2P54868 GLS-203ENST00000409215 632 ntTSL 4 BASIC4.5□□□□□ -1.69
HMGCS2P54868 TRIM60P17-201ENST00000415181 719 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 AL392003.1-201ENST00000434394 243 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 HSPD1P21-201ENST00000436541 245 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 AC083863.1-201ENST00000438811 231 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC4.5□□□□□ -1.69
HMGCS2P54868 RPL7L1P1-201ENST00000448259 785 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 APOOP2-201ENST00000461561 539 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.5□□□□□ -1.69
HMGCS2P54868 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.5□□□□□ -1.69
HMGCS2P54868 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.5□□□□□ -1.69
HMGCS2P54868 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.5□□□□□ -1.69
HMGCS2P54868 MIR3922-201ENST00000585192 84 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC4.5□□□□□ -1.69
HMGCS2P54868 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.5□□□□□ -1.69
HMGCS2P54868 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.5□□□□□ -1.69
HMGCS2P54868 AC096577.2-201ENST00000611455 153 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 AC015922.4-201ENST00000612568 690 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 AL162574.2-201ENST00000614618 657 ntBASIC4.5□□□□□ -1.69
HMGCS2P54868 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.5□□□□□ -1.69
HMGCS2P54868 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
HMGCS2P54868 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HMGCS2P54868 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.5□□□□□ -1.69
HMGCS2P54868 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.5□□□□□ -1.69
HMGCS2P54868 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
HMGCS2P54868 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
HMGCS2P54868 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HMGCS2P54868 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
HMGCS2P54868 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HMGCS2P54868 AC105074.1-201ENST00000623380 3095 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
HMGCS2P54868 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
HMGCS2P54868 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
HMGCS2P54868 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
HMGCS2P54868 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HMGCS2P54868 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.49□□□□□ -1.69
HMGCS2P54868 OR10AB1P-202ENST00000641219 1686 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HMGCS2P54868 RNU6-618P-201ENST00000363518 112 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC4.49□□□□□ -1.69
HMGCS2P54868 RNU6-152P-201ENST00000384037 107 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 SNORA9-201ENST00000384215 133 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 MIR183-201ENST00000384958 110 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 SNORA3C-201ENST00000408792 125 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 AL512504.1-201ENST00000415494 778 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 AC114814.2-201ENST00000419195 485 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 OR6C64P-201ENST00000419708 825 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.49□□□□□ -1.69
HMGCS2P54868 PRDX3P3-201ENST00000447765 522 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 RAB28P3-201ENST00000448325 597 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.49□□□□□ -1.69
HMGCS2P54868 PLGLA-201ENST00000465668 449 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.49□□□□□ -1.69
HMGCS2P54868 AC006517.1-201ENST00000480485 328 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.49□□□□□ -1.69
HMGCS2P54868 HAUS1P1-201ENST00000505275 832 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.49□□□□□ -1.69
HMGCS2P54868 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.49□□□□□ -1.69
HMGCS2P54868 AC117525.1-201ENST00000515228 503 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 OR4A12P-201ENST00000530847 918 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.49□□□□□ -1.69
HMGCS2P54868 AC026979.4-201ENST00000606555 645 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 AL159169.3-201ENST00000608871 561 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 AC104307.1-201ENST00000616142 196 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 U6.105-201ENST00000637379 88 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 HSPD1P11-201ENST00000508643 1702 ntBASIC4.49□□□□□ -1.69
HMGCS2P54868 LINC00561-201ENST00000565815 2738 ntBASIC4.48□□□□□ -1.69
HMGCS2P54868 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HMGCS2P54868 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HMGCS2P54868 MIR365B-201ENST00000362317 111 ntBASIC4.48□□□□□ -1.69
HMGCS2P54868 RNU6-525P-201ENST00000363685 104 ntBASIC4.48□□□□□ -1.69
HMGCS2P54868 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.48□□□□□ -1.69
HMGCS2P54868 MIR34B-201ENST00000385076 84 ntBASIC4.48□□□□□ -1.69
HMGCS2P54868 AL356806.1-201ENST00000422524 916 ntBASIC4.48□□□□□ -1.69
HMGCS2P54868 AL590623.1-201ENST00000427864 105 ntBASIC4.48□□□□□ -1.69
HMGCS2P54868 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.48□□□□□ -1.69
HMGCS2P54868 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms