Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR1282-201ENST00000408865 101 ntBASIC6.14□□□□□ -1.43
LIG3P49916 RPL35AP31-201ENST00000418340 337 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG3P49916 TRIM60P3Y-201ENST00000432201 673 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AL358934.1-201ENST00000432346 324 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG3P49916 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.14□□□□□ -1.43
LIG3P49916 MTND4LP16-201ENST00000440828 295 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG3P49916 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG3P49916 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG3P49916 AC073594.1-201ENST00000462065 364 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC010301.1-201ENST00000473936 355 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC069439.1-201ENST00000494739 167 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC012170.1-201ENST00000495139 359 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG3P49916 LSM3P4-201ENST00000502948 309 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC024589.1-201ENST00000512207 263 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC010493.1-201ENST00000513479 292 ntBASIC6.14□□□□□ -1.43
LIG3P49916 snoU109.5-201ENST00000516231 132 ntBASIC6.14□□□□□ -1.43
LIG3P49916 RN7SKP238-201ENST00000516483 249 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC6.14□□□□□ -1.43
LIG3P49916 AP003467.2-201ENST00000520175 319 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG3P49916 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG3P49916 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG3P49916 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG3P49916 TPMTP1-201ENST00000592307 737 ntBASIC6.14□□□□□ -1.43
LIG3P49916 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG3P49916 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG3P49916 AL359999.1-201ENST00000604513 294 ntBASIC6.14□□□□□ -1.43
LIG3P49916 RPL12P48-201ENST00000605620 304 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC008536.2-201ENST00000607284 349 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC079395.2-201ENST00000610982 737 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AC015712.7-201ENST00000615211 635 ntBASIC6.14□□□□□ -1.43
LIG3P49916 AL137067.2-201ENST00000621202 131 ntBASIC6.14□□□□□ -1.43
LIG3P49916 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG3P49916 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
LIG3P49916 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
LIG3P49916 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
LIG3P49916 AC117529.2-201ENST00000512159 2068 ntBASIC6.14□□□□□ -1.43
LIG3P49916 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG3P49916 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
LIG3P49916 AL354685.2-201ENST00000448218 1447 ntBASIC6.14□□□□□ -1.43
LIG3P49916 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
LIG3P49916 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.14□□□□□ -1.43
LIG3P49916 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.14□□□□□ -1.43
LIG3P49916 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.14□□□□□ -1.43
LIG3P49916 AC008627.1-201ENST00000517511 1704 ntBASIC6.13□□□□□ -1.43
LIG3P49916 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 TEK-205ENST00000615002 4666 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
LIG3P49916 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 RNY4P34-201ENST00000364779 95 ntBASIC6.13□□□□□ -1.43
LIG3P49916 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG3P49916 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG3P49916 NFIB-202ENST00000380924 840 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG3P49916 AC245054.1-201ENST00000420944 258 ntBASIC6.13□□□□□ -1.43
LIG3P49916 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 AC073464.1-201ENST00000429823 534 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 GAPDHP14-201ENST00000450472 937 ntBASIC6.13□□□□□ -1.43
LIG3P49916 RGS5-217ENST00000451759 835 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG3P49916 AL645937.3-201ENST00000453647 936 ntBASIC6.13□□□□□ -1.43
LIG3P49916 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG3P49916 MTCO3P20-201ENST00000454926 688 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG3P49916 RPS15AP17-201ENST00000470598 390 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AC005912.1-201ENST00000495392 255 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 AP000790.1-201ENST00000528891 737 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AC109635.3-201ENST00000529536 185 ntBASIC6.13□□□□□ -1.43
LIG3P49916 OR5AP1P-201ENST00000529730 940 ntBASIC6.13□□□□□ -1.43
LIG3P49916 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG3P49916 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG3P49916 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG3P49916 AC079905.1-201ENST00000549280 475 ntBASIC6.13□□□□□ -1.43
LIG3P49916 CENPUP2-201ENST00000555897 1186 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AL390334.1-201ENST00000556395 450 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG3P49916 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG3P49916 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG3P49916 NRBF2P1-201ENST00000587407 859 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AL138895.2-201ENST00000603019 178 ntBASIC6.13□□□□□ -1.43
LIG3P49916 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG3P49916 AC141002.1-201ENST00000607025 279 ntBASIC6.13□□□□□ -1.43
LIG3P49916 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG3P49916 AC243654.2-201ENST00000612843 443 ntBASIC6.13□□□□□ -1.43
LIG3P49916 MLECP1-201ENST00000615893 709 ntBASIC6.13□□□□□ -1.43
LIG3P49916 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG3P49916 PISRT1-201ENST00000626175 531 ntBASIC6.13□□□□□ -1.43
LIG3P49916 AC073488.3-201ENST00000631611 778 ntBASIC6.13□□□□□ -1.43
LIG3P49916 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
LIG3P49916 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms