Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SCN4AP35499 RPL7P60-201ENST00000397636 735 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 AL031121.1-201ENST00000406553 254 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.52□□□□□ -1.69
SCN4AP35499 AC006511.1-201ENST00000470614 315 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC4.52□□□□□ -1.69
SCN4AP35499 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.52□□□□□ -1.69
SCN4AP35499 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SCN4AP35499 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.52□□□□□ -1.69
SCN4AP35499 AL589935.2-201ENST00000616471 1231 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 AL139089.1-201ENST00000620372 975 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.52□□□□□ -1.69
SCN4AP35499 AC073869.7-201ENST00000640874 297 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 OR6C71P-202ENST00000641886 1107 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SCN4AP35499 AC097504.1-201ENST00000515103 2415 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 AC000123.3-201ENST00000624029 4975 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.52□□□□□ -1.69
SCN4AP35499 AL356489.2-201ENST00000566968 3528 ntBASIC4.52□□□□□ -1.69
SCN4AP35499 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
SCN4AP35499 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 RPL7P44-201ENST00000424827 742 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 RPSAP41-201ENST00000439695 860 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.51□□□□□ -1.69
SCN4AP35499 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.51□□□□□ -1.69
SCN4AP35499 RPL7P23-201ENST00000493874 747 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 AC010285.3-201ENST00000511668 676 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 AC008694.2-201ENST00000517591 306 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 IGLV3-26-201ENST00000520756 302 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.51□□□□□ -1.69
SCN4AP35499 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.51□□□□□ -1.69
SCN4AP35499 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 AC139426.3-201ENST00000605648 2059 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
SCN4AP35499 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 AC118273.1-201ENST00000525324 3006 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.51□□□□□ -1.69
SCN4AP35499 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 LINC01109-201ENST00000603837 3081 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.51□□□□□ -1.69
SCN4AP35499 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 SEPT7P2-202ENST00000398921 823 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 HMGB1P37-201ENST00000439613 609 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.51□□□□□ -1.69
SCN4AP35499 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.51□□□□□ -1.69
SCN4AP35499 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.51□□□□□ -1.69
SCN4AP35499 AC079171.1-201ENST00000568788 914 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 MIR5186-201ENST00000577504 120 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.51□□□□□ -1.69
SCN4AP35499 AC125494.3-201ENST00000602759 455 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 AC133552.5-201ENST00000604266 540 ntBASIC4.51□□□□□ -1.69
SCN4AP35499 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SCN4AP35499 MARK2P15-201ENST00000432204 2186 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
SCN4AP35499 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SCN4AP35499 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.5□□□□□ -1.69
SCN4AP35499 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.5□□□□□ -1.69
SCN4AP35499 AC007823.1-201ENST00000569932 1566 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.5□□□□□ -1.69
SCN4AP35499 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SCN4AP35499 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SCN4AP35499 RPL23AP57-201ENST00000332361 466 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 GSTM3P2-201ENST00000412746 530 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.5□□□□□ -1.69
SCN4AP35499 SETD6P1-201ENST00000444575 317 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 BTF3P5-201ENST00000457252 467 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.5□□□□□ -1.69
SCN4AP35499 RANP9-201ENST00000519957 271 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.5□□□□□ -1.69
SCN4AP35499 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.5□□□□□ -1.69
SCN4AP35499 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.5□□□□□ -1.69
SCN4AP35499 AC079298.2-201ENST00000623885 459 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 AL672167.1-205ENST00000641112 3080 ntBASIC4.5□□□□□ -1.69
SCN4AP35499 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SCN4AP35499 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SCN4AP35499 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SCN4AP35499 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SCN4AP35499 MTND5P12-201ENST00000502851 1449 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 RNU4-44P-201ENST00000363050 141 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 VDAC2P1-201ENST00000399358 958 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 ATP5JP1-201ENST00000431631 322 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SCN4AP35499 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.49□□□□□ -1.69
SCN4AP35499 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.49□□□□□ -1.69
SCN4AP35499 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.49□□□□□ -1.69
SCN4AP35499 AC119674.1-212ENST00000641155 993 ntBASIC4.49□□□□□ -1.69
SCN4AP35499 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
SCN4AP35499 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SCN4AP35499 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SCN4AP35499 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.49□□□□□ -1.69
SCN4AP35499 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 133.1 ms