Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.54□□□□□ -1.68
COL5A3P25940 OR7A8P-201ENST00000595427 913 ntBASIC4.54□□□□□ -1.68
COL5A3P25940 YPEL5P2-201ENST00000605553 359 ntBASIC4.54□□□□□ -1.68
COL5A3P25940 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 BDP1P-201ENST00000582658 1990 ntBASIC4.54□□□□□ -1.68
COL5A3P25940 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.54□□□□□ -1.68
COL5A3P25940 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
COL5A3P25940 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A3P25940 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.53□□□□□ -1.68
COL5A3P25940 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A3P25940 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A3P25940 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.53□□□□□ -1.68
COL5A3P25940 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.53□□□□□ -1.68
COL5A3P25940 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.53□□□□□ -1.68
COL5A3P25940 RPL26P28-201ENST00000451325 435 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.53□□□□□ -1.68
COL5A3P25940 RN7SKP289-201ENST00000517244 295 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 AC005476.1-201ENST00000554427 397 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.53□□□□□ -1.68
COL5A3P25940 AL513477.2-201ENST00000607858 568 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 AC128687.2-201ENST00000609657 566 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 AC015722.2-201ENST00000622210 551 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 AC091905.1-201ENST00000624400 311 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 AC127502.3-201ENST00000636170 1206 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.53□□□□□ -1.68
COL5A3P25940 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
COL5A3P25940 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A3P25940 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL5A3P25940 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
COL5A3P25940 AL133383.2-201ENST00000622958 2336 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 LINC01109-201ENST00000603837 3081 ntBASIC4.53□□□□□ -1.68
COL5A3P25940 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL5A3P25940 RN7SKP111-201ENST00000410349 271 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 AL691447.1-201ENST00000419456 387 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 RPF2P1-201ENST00000424137 906 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
COL5A3P25940 AC006994.1-201ENST00000438212 839 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.52□□□□□ -1.69
COL5A3P25940 AC098824.1-201ENST00000453565 980 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 RN7SL807P-201ENST00000470923 297 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 ARL4AP1-201ENST00000503220 705 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.52□□□□□ -1.69
COL5A3P25940 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A3P25940 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.52□□□□□ -1.69
COL5A3P25940 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.52□□□□□ -1.69
COL5A3P25940 MIR4276-201ENST00000584832 70 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC4.52□□□□□ -1.69
COL5A3P25940 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 AC090337.1-201ENST00000579651 2074 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC4.52□□□□□ -1.69
COL5A3P25940 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A3P25940 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 AL357075.1-201ENST00000404107 726 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 RN7SKP97-201ENST00000410966 333 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 AL671855.1-201ENST00000446875 1203 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 AC090589.1-201ENST00000473109 362 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.52□□□□□ -1.69
COL5A3P25940 FTH1P24-201ENST00000503502 462 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.52□□□□□ -1.69
COL5A3P25940 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.52□□□□□ -1.69
COL5A3P25940 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.52□□□□□ -1.69
COL5A3P25940 RN7SL371P-201ENST00000578099 267 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A3P25940 CKS1BP3-201ENST00000600888 237 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 BNIP3P41-202ENST00000616656 861 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 AC026422.1-201ENST00000623961 452 ntBASIC4.52□□□□□ -1.69
COL5A3P25940 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.52□□□□□ -1.69
COL5A3P25940 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL5A3P25940 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A3P25940 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A3P25940 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL5A3P25940 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL5A3P25940 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A3P25940 GNG5P1-201ENST00000255500 204 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 RPL23AP57-201ENST00000332361 466 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 U3.39-201ENST00000408569 239 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.51□□□□□ -1.69
COL5A3P25940 ELOCP8-201ENST00000439309 332 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 ELOCP15-201ENST00000442090 332 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 UBE2DNL-203ENST00000474922 222 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 RPS3AP14-201ENST00000483907 780 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 AC098799.1-201ENST00000504752 800 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 RN7SKP83-201ENST00000516512 178 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 MIR5680-201ENST00000577577 84 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 AC012603.1-201ENST00000606424 528 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 AC135507.2-201ENST00000612443 309 ntBASIC4.51□□□□□ -1.69
COL5A3P25940 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL5A3P25940 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms