Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A1P12109 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A1P12109 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A1P12109 AC114546.3-201ENST00000623582 1734 ntBASIC5.84□□□□□ -1.47
COL6A1P12109 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A1P12109 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.84□□□□□ -1.47
COL6A1P12109 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.84□□□□□ -1.47
COL6A1P12109 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
COL6A1P12109 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL6A1P12109 AC109446.4-201ENST00000623235 2755 ntBASIC5.84□□□□□ -1.48
COL6A1P12109 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.83□□□□□ -1.48
COL6A1P12109 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A1P12109 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A1P12109 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.83□□□□□ -1.48
COL6A1P12109 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A1P12109 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A1P12109 AC005332.5-201ENST00000591222 2919 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A1P12109 AL359955.1-201ENST00000455242 3275 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL6A1P12109 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
COL6A1P12109 AC011477.1-204ENST00000623416 1325 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A1P12109 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A1P12109 IGKV7-3-201ENST00000357453 298 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A1P12109 HSPA8P15-201ENST00000401676 786 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A1P12109 AC013404.1-201ENST00000413068 249 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 CEACAMP8-201ENST00000413902 580 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 CDK8P2-201ENST00000415020 547 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A1P12109 PAICSP7-201ENST00000419829 962 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 ATP5F1P1-201ENST00000433775 569 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC5.83□□□□□ -1.48
COL6A1P12109 GTF2IP7-202ENST00000436677 309 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A1P12109 CBX1P4-201ENST00000439415 457 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 MTND1P30-201ENST00000441241 901 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A1P12109 AC239809.1-201ENST00000450470 217 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC5.83□□□□□ -1.48
COL6A1P12109 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC5.83□□□□□ -1.48
COL6A1P12109 AC007537.2-201ENST00000472093 511 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
COL6A1P12109 AL161747.1-201ENST00000480068 358 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 RPL9P33-201ENST00000484311 566 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 WBP1LP4-201ENST00000505043 344 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A1P12109 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.83□□□□□ -1.48
COL6A1P12109 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A1P12109 DUXAP2-201ENST00000519198 589 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AC134698.5-201ENST00000519444 336 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.83□□□□□ -1.48
COL6A1P12109 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC5.83□□□□□ -1.48
COL6A1P12109 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.83□□□□□ -1.48
COL6A1P12109 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A1P12109 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC5.83□□□□□ -1.48
COL6A1P12109 AC091042.1-201ENST00000579213 173 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AP000769.2-201ENST00000602344 396 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 RPL26P30-202ENST00000602923 645 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AP003973.1-201ENST00000604639 691 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.83□□□□□ -1.48
COL6A1P12109 AC019193.2-201ENST00000610012 634 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AC009509.4-201ENST00000619202 509 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AC116563.2-201ENST00000624751 535 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AC087821.2-201ENST00000637086 450 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AC244258.1-201ENST00000637553 1071 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A1P12109 AC083899.1-201ENST00000454465 3819 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 AC090971.4-201ENST00000560291 1800 ntBASIC5.83□□□□□ -1.48
COL6A1P12109 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A1P12109 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL6A1P12109 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL6A1P12109 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL6A1P12109 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL6A1P12109 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.82□□□□□ -1.48
COL6A1P12109 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A1P12109 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A1P12109 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A1P12109 AL445437.1-201ENST00000623157 3087 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC138393.1-206ENST00000540997 1886 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC073544.1-201ENST00000600110 1595 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC022893.2-201ENST00000564832 3296 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL6A1P12109 RNU6-253P-201ENST00000384730 105 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 DEFB108C-201ENST00000400154 252 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AL590290.1-201ENST00000405336 380 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC5.82□□□□□ -1.48
COL6A1P12109 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC5.82□□□□□ -1.48
COL6A1P12109 USP9YP31-201ENST00000431405 881 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 RPL23AP76-201ENST00000441860 458 ntBASIC5.82□□□□□ -1.48
COL6A1P12109 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL6A1P12109 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC5.82□□□□□ -1.48
COL6A1P12109 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.82□□□□□ -1.48
COL6A1P12109 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC5.82□□□□□ -1.48
COL6A1P12109 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.82□□□□□ -1.48
COL6A1P12109 AC004069.2-201ENST00000505438 1114 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms