Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC022893.2-201ENST00000564832 3296 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
CLDN3O15551 MIR448-201ENST00000362131 111 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 RNA5SP388-201ENST00000362584 119 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 RNU6-40P-201ENST00000384254 107 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.46□□□□□ -1.7
CLDN3O15551 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.46□□□□□ -1.7
CLDN3O15551 AL358472.1-201ENST00000431295 329 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 TRIM60P13-201ENST00000432350 1283 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 RPL21P133-201ENST00000443666 476 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.46□□□□□ -1.7
CLDN3O15551 TPMTP4-201ENST00000450749 678 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.46□□□□□ -1.7
CLDN3O15551 AC006517.1-201ENST00000480485 328 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.46□□□□□ -1.7
CLDN3O15551 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.46□□□□□ -1.7
CLDN3O15551 KRT19P6-201ENST00000510983 209 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 AC108043.1-201ENST00000512696 574 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 RNU7-143P-201ENST00000516781 65 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.46□□□□□ -1.7
CLDN3O15551 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.46□□□□□ -1.7
CLDN3O15551 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.46□□□□□ -1.7
CLDN3O15551 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.46□□□□□ -1.7
CLDN3O15551 AC025627.2-201ENST00000576220 160 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 MIR4512-201ENST00000583257 77 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.46□□□□□ -1.7
CLDN3O15551 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CLDN3O15551 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CLDN3O15551 AC008638.3-201ENST00000603341 463 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 AC009237.17-201ENST00000618111 748 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.46□□□□□ -1.7
CLDN3O15551 ZNF962P-201ENST00000443465 3140 ntBASIC4.46□□□□□ -1.7
CLDN3O15551 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CLDN3O15551 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.46□□□□□ -1.7
CLDN3O15551 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.46□□□□□ -1.7
CLDN3O15551 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
CLDN3O15551 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
CLDN3O15551 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.45□□□□□ -1.7
CLDN3O15551 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.45□□□□□ -1.7
CLDN3O15551 AL356489.2-201ENST00000566968 3528 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
CLDN3O15551 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.45□□□□□ -1.7
CLDN3O15551 SNORD35B-201ENST00000363660 87 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.45□□□□□ -1.7
CLDN3O15551 PGBD4P8-201ENST00000412993 562 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AC115285.1-201ENST00000424879 736 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 OR5BE1P-201ENST00000425977 939 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.45□□□□□ -1.7
CLDN3O15551 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.45□□□□□ -1.7
CLDN3O15551 AC006326.1-201ENST00000445465 787 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.45□□□□□ -1.7
CLDN3O15551 AC010469.1-201ENST00000463864 576 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 RN7SL585P-201ENST00000470538 280 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AL132838.2-201ENST00000492041 314 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CLDN3O15551 AC025554.1-201ENST00000505641 188 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.45□□□□□ -1.7
CLDN3O15551 SNORD116-26-201ENST00000516006 96 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 OR5M7P-201ENST00000526140 972 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.45□□□□□ -1.7
CLDN3O15551 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.45□□□□□ -1.7
CLDN3O15551 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.45□□□□□ -1.7
CLDN3O15551 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.45□□□□□ -1.7
CLDN3O15551 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.45□□□□□ -1.7
CLDN3O15551 MIR3160-1-201ENST00000577972 85 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.45□□□□□ -1.7
CLDN3O15551 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CLDN3O15551 VN1R84P-201ENST00000593697 235 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.45□□□□□ -1.7
CLDN3O15551 SUMO2P14-201ENST00000604488 293 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AC114878.2-201ENST00000604863 1251 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AL451044.1-201ENST00000604867 238 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CLDN3O15551 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.45□□□□□ -1.7
CLDN3O15551 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.45□□□□□ -1.7
CLDN3O15551 AC000123.2-201ENST00000623124 461 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 AC008785.1-201ENST00000624475 456 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 OR5BE1P-202ENST00000641168 1176 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 CASC19-261ENST00000641853 1638 ntBASIC4.45□□□□□ -1.7
CLDN3O15551 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CLDN3O15551 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CLDN3O15551 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CLDN3O15551 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CLDN3O15551 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CLDN3O15551 SNORD74.4-201ENST00000364129 80 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 CCNB2P1-201ENST00000399411 1150 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 RPL21P65-201ENST00000406094 466 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CLDN3O15551 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.44□□□□□ -1.7
CLDN3O15551 YY1P1-201ENST00000427625 668 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 AL117339.2-201ENST00000430475 180 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 ELOCP18-201ENST00000434209 337 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.44□□□□□ -1.7
CLDN3O15551 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.44□□□□□ -1.7
CLDN3O15551 MED6P1-201ENST00000439659 713 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 MTND2P8-201ENST00000450555 1025 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.44□□□□□ -1.7
CLDN3O15551 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.44□□□□□ -1.7
CLDN3O15551 AC017037.1-201ENST00000508460 471 ntBASIC4.44□□□□□ -1.7
CLDN3O15551 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms