Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RPL5P32-201ENST00000454085 879 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC087385.1-201ENST00000475062 312 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC020593.1-201ENST00000507399 299 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AP006289.1-201ENST00000538089 277 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 CBX3P5-201ENST00000552017 521 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AL109766.1-201ENST00000555080 552 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 CENPUP2-201ENST00000555897 1186 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC005229.3-201ENST00000603438 323 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC005191.1-201ENST00000603950 358 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AL354984.3-201ENST00000604803 325 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC011374.2-201ENST00000607135 526 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC015802.5-201ENST00000607478 399 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC012409.3-201ENST00000611343 981 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC138907.10-201ENST00000623708 983 ntBASIC4.29□□□□□ -1.72
VPS39Q96JC1 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS39Q96JC1 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS39Q96JC1 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 ZNF90P1-201ENST00000480493 1951 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC007685.1-201ENST00000329806 452 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 RNU6-356P-201ENST00000384140 107 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 DNAJC19P6-201ENST00000401853 280 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 FAR2P4-202ENST00000425399 584 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 RPEP3-201ENST00000425462 676 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC009963.2-201ENST00000453431 138 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC089999.1-201ENST00000460336 374 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC092045.1-201ENST00000495716 1231 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC017037.1-201ENST00000508460 471 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC004923.2-201ENST00000529649 369 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC006064.5-201ENST00000541782 248 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC074029.1-201ENST00000552531 1044 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC015813.4-201ENST00000610469 179 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 uc_338.13-201ENST00000618243 179 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 MIR7702-201ENST00000621931 59 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC073342.3-201ENST00000624211 193 ntBASIC4.28□□□□□ -1.72
VPS39Q96JC1 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS39Q96JC1 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS39Q96JC1 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 AC012618.3-205ENST00000637896 1496 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 OR4K17-201ENST00000315543 1032 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS39Q96JC1 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
VPS39Q96JC1 MIR331-201ENST00000362302 94 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 SNORD115-48-201ENST00000364764 76 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 RNA5SP167-201ENST00000365461 116 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 RHOT1P2-201ENST00000366423 333 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 HMGB1P10-201ENST00000395823 563 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 AL583835.1-201ENST00000399570 407 ntBASIC4.27□□□□□ -1.73
VPS39Q96JC1 RPS3AP23-201ENST00000401762 784 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms