Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC087821.2-201ENST00000637086 450 ntBASIC4.41□□□□□ -1.7
BEST3Q8N1M1 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 ASNSP1-204ENST00000641977 1664 ntBASIC4.41□□□□□ -1.7
BEST3Q8N1M1 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
BEST3Q8N1M1 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.4□□□□□ -1.7
BEST3Q8N1M1 Z98755.1-201ENST00000407015 1384 ntBASIC4.4□□□□□ -1.7
BEST3Q8N1M1 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
BEST3Q8N1M1 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
BEST3Q8N1M1 SGO1P1-201ENST00000603525 1447 ntBASIC4.4□□□□□ -1.7
BEST3Q8N1M1 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.4□□□□□ -1.7
BEST3Q8N1M1 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 OR1L1-202ENST00000373686 1083 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 MIR16-1-201ENST00000385271 89 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 RNU1-82P-201ENST00000390851 165 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC136624.1-201ENST00000400791 413 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC234782.4-201ENST00000417646 1048 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 KRR1P1-201ENST00000419430 803 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 CNOT7P1-201ENST00000429006 852 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 RPL12P28-201ENST00000430852 489 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC092013.1-201ENST00000438795 332 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 ELOCP10-201ENST00000440624 327 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC099063.2-201ENST00000446360 662 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 CEACAMP6-201ENST00000452007 574 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 MRPL42P4-201ENST00000453267 443 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 PRDX3P4-201ENST00000470828 747 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 RN7SL481P-201ENST00000477764 299 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC011037.1-201ENST00000483964 558 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 RFPL4AP5-201ENST00000514977 504 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AL110118.1-201ENST00000553543 400 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 BPTFP1-201ENST00000579209 492 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC015688.2-201ENST00000584523 262 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC115085.1-201ENST00000588924 229 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 VN1R83P-201ENST00000595685 445 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 ELOCP34-201ENST00000604436 327 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AL355816.1-201ENST00000607951 118 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC013470.4-201ENST00000619978 986 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC012414.7-202ENST00000622705 1090 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 MFSD8-245ENST00000641743 948 ntBASIC4.4□□□□□ -1.71
BEST3Q8N1M1 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
BEST3Q8N1M1 AC092162.3-201ENST00000624511 1624 ntBASIC4.39□□□□□ -1.71
BEST3Q8N1M1 CASC19-206ENST00000641028 1430 ntBASIC4.39□□□□□ -1.71
BEST3Q8N1M1 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.39□□□□□ -1.71
BEST3Q8N1M1 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
BEST3Q8N1M1 MIR92A2-201ENST00000385299 75 ntBASIC4.39□□□□□ -1.71
BEST3Q8N1M1 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
BEST3Q8N1M1 RPS3AP23-201ENST00000401762 784 ntBASIC4.39□□□□□ -1.71
BEST3Q8N1M1 RNU6-575P-201ENST00000411326 105 ntBASIC4.39□□□□□ -1.71
BEST3Q8N1M1 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.39□□□□□ -1.71
BEST3Q8N1M1 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.39□□□□□ -1.71
BEST3Q8N1M1 RPL6P29-201ENST00000414863 865 ntBASIC4.39□□□□□ -1.71
BEST3Q8N1M1 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.39□□□□□ -1.71
BEST3Q8N1M1 AL645608.4-201ENST00000423619 154 ntBASIC4.39□□□□□ -1.71
BEST3Q8N1M1 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.39□□□□□ -1.71
BEST3Q8N1M1 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.39□□□□□ -1.71
BEST3Q8N1M1 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms