Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC012075.1-201ENST00000436549 580 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AL357552.1-201ENST00000445254 415 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 HMGN2P21-201ENST00000447764 270 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 DHFRP3-201ENST00000455595 559 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RN7SL75P-201ENST00000461926 281 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 CENPBD1P1-201ENST00000464061 469 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RPL23AP67-201ENST00000465341 474 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AP000563.1-201ENST00000490865 758 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC108941.1-201ENST00000502853 530 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 CDV3-208ENST00000511392 554 ntTSL 5 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RNA5SP217-201ENST00000515959 91 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 OR4A12P-201ENST00000530847 918 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC006960.3-201ENST00000561845 705 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC022655.2-201ENST00000577280 318 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AP001160.4-201ENST00000596971 382 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC069234.5-201ENST00000611056 416 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AL354976.1-201ENST00000613843 387 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC092184.1-201ENST00000625042 715 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 U3.6-201ENST00000363622 211 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 RNU6ATAC5P-201ENST00000388104 126 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 IL6-206ENST00000407492 926 ntTSL 3 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 RPL23AP47-201ENST00000408017 460 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL662791.1-201ENST00000441992 928 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL356121.1-201ENST00000442911 156 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 RPL39P40-201ENST00000445481 146 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 EEF1B2P3-201ENST00000447718 678 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 RPL36AP33-201ENST00000450395 310 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 RNU6ATAC28P-201ENST00000459249 118 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC010683.1-201ENST00000473673 378 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 ARL4AP2-201ENST00000507378 601 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC005921.1-201ENST00000510589 286 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 SNORA70.19-201ENST00000516717 90 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AP006245.1-201ENST00000522549 120 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 MTCO3P13-201ENST00000577757 781 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 YWHAQP7-201ENST00000603536 658 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 TEX41-238ENST00000604253 709 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC090425.2-201ENST00000608818 501 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL049539.1-201ENST00000611964 459 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC107871.2-201ENST00000612894 502 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 uc_338.13-201ENST00000618243 179 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL357559.1-201ENST00000622228 274 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC116667.1-201ENST00000604855 2072 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 AC107081.3-201ENST00000612715 2034 ntBASIC2.25□□□□□ -2.05
LINC00643Q86TS7 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
LINC00643Q86TS7 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 SNORA31-201ENST00000362607 130 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 MIR659-201ENST00000384963 97 ntBASIC2.24□□□□□ -2.05
LINC00643Q86TS7 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC2.24□□□□□ -2.05
LINC00643Q86TS7 PRELID3BP11-201ENST00000414230 479 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms