Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 Z74696.2-201ENST00000436514 498 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 Z75741.1-201ENST00000446793 314 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 APOOP2-201ENST00000461561 539 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC006511.1-201ENST00000470614 315 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC010342.1-201ENST00000514047 877 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 HIGD1AP18-201ENST00000520730 278 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 RNA5SP120-201ENST00000410900 112 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 ATP5A1P2-201ENST00000412323 255 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 RPL37P3-201ENST00000456825 293 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AP000942.1-201ENST00000463969 747 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC139783.2-201ENST00000504847 1145 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC026784.1-201ENST00000507986 352 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 SNORA70.17-201ENST00000516449 133 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 MTND1P6-201ENST00000523621 946 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 MIR4325-201ENST00000583049 90 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AL773545.4-201ENST00000637262 310 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AL513478.4-201ENST00000641636 310 ntBASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC88AQ3V6T2 AL035425.3-201ENST00000564206 4996 ntBASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 AP000542.2-201ENST00000623199 6179 ntBASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 RNU1-33P-201ENST00000364249 162 ntBASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 SETP15-201ENST00000412724 337 ntBASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 AL591419.1-201ENST00000427423 339 ntBASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 HMGB1P19-201ENST00000517578 577 ntBASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.65□□□□□ -1.66
CCDC88AQ3V6T2 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC88AQ3V6T2 AC026523.2-201ENST00000625039 7739 ntBASIC4.65□□□□□ -1.67
CCDC88AQ3V6T2 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC88AQ3V6T2 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC88AQ3V6T2 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC88AQ3V6T2 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC88AQ3V6T2 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.65□□□□□ -1.67
CCDC88AQ3V6T2 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC88AQ3V6T2 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 SNORD9-201ENST00000362566 104 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 MTCO1P45-201ENST00000431457 267 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AC017037.1-201ENST00000508460 471 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 RNA5SP50-201ENST00000363731 107 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 MIR513A2-201ENST00000385249 127 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 U3.26-201ENST00000391236 204 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 RPL7P60-201ENST00000397636 735 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 SNORA3C-201ENST00000408792 125 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AC010740.1-201ENST00000417035 684 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AC079880.2-201ENST00000603790 1213 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AL033523.1-201ENST00000605153 153 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 AC007823.1-201ENST00000569932 1566 ntBASIC4.64□□□□□ -1.67
CCDC88AQ3V6T2 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CCDC88AQ3V6T2 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms