Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AP005264.7-201ENST00000625003 745 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 MIR3651-201ENST00000630427 90 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 LINC02471-203ENST00000641941 4752 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CHD3Q12873 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CHD3Q12873 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
CHD3Q12873 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.48□□□□□ -1.85
CHD3Q12873 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.48□□□□□ -1.85
CHD3Q12873 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CHD3Q12873 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.48□□□□□ -1.85
CHD3Q12873 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CHD3Q12873 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CHD3Q12873 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CHD3Q12873 ZNF603P-201ENST00000405613 487 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.48□□□□□ -1.85
CHD3Q12873 TPT1P2-201ENST00000413105 503 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.48□□□□□ -1.85
CHD3Q12873 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.48□□□□□ -1.85
CHD3Q12873 ELOCP8-201ENST00000439309 332 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 ELOCP15-201ENST00000442090 332 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 RPL5P32-201ENST00000454085 879 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.48□□□□□ -1.85
CHD3Q12873 AC018797.3-201ENST00000513388 1241 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.48□□□□□ -1.85
CHD3Q12873 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.48□□□□□ -1.85
CHD3Q12873 AC091516.1-201ENST00000549191 703 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.48□□□□□ -1.85
CHD3Q12873 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.48□□□□□ -1.85
CHD3Q12873 MIR5684-201ENST00000585074 65 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CHD3Q12873 AP002967.1-201ENST00000624203 539 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.48□□□□□ -1.85
CHD3Q12873 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.48□□□□□ -1.85
CHD3Q12873 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.47□□□□□ -1.85
CHD3Q12873 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.47□□□□□ -1.85
CHD3Q12873 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CHD3Q12873 AC134882.1-201ENST00000603738 1676 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
CHD3Q12873 AC007529.1-201ENST00000418574 2178 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 SNORA73.2-201ENST00000364946 201 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CHD3Q12873 Z92545.1-201ENST00000411782 234 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 OR51A6P-201ENST00000418680 1004 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC3.47□□□□□ -1.85
CHD3Q12873 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.47□□□□□ -1.85
CHD3Q12873 AC239809.1-201ENST00000450470 217 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.47□□□□□ -1.85
CHD3Q12873 AC010460.1-201ENST00000507087 466 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CHD3Q12873 RNU6-964P-201ENST00000516524 69 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 AC107016.1-201ENST00000550463 337 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.47□□□□□ -1.85
CHD3Q12873 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.47□□□□□ -1.85
CHD3Q12873 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.47□□□□□ -1.85
CHD3Q12873 AC019278.1-201ENST00000623516 479 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.47□□□□□ -1.85
CHD3Q12873 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.47□□□□□ -1.85
CHD3Q12873 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.47□□□□□ -1.85
CHD3Q12873 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
CHD3Q12873 AC063923.1-201ENST00000478982 1619 ntBASIC3.47□□□□□ -1.85
CHD3Q12873 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
CHD3Q12873 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC3.47□□□□□ -1.85
CHD3Q12873 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CHD3Q12873 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.47□□□□□ -1.85
CHD3Q12873 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CHD3Q12873 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC3.46□□□□□ -1.86
CHD3Q12873 RPL6P21-201ENST00000418672 846 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.46□□□□□ -1.86
CHD3Q12873 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.46□□□□□ -1.86
CHD3Q12873 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC3.46□□□□□ -1.86
CHD3Q12873 PPIAP15-201ENST00000479662 484 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 RPS3AP6-201ENST00000484430 795 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 RPL29P14-201ENST00000495837 428 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 BNIP3P41-201ENST00000503774 571 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.46□□□□□ -1.86
CHD3Q12873 RNU6-352P-201ENST00000516908 107 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AL352979.3-201ENST00000553515 247 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.46□□□□□ -1.86
CHD3Q12873 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CHD3Q12873 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CHD3Q12873 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.46□□□□□ -1.86
CHD3Q12873 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CHD3Q12873 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CHD3Q12873 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
CHD3Q12873 Z73965.1-201ENST00000623412 2297 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AC095050.2-201ENST00000510748 1458 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AC027287.1-201ENST00000553115 1453 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.86
CHD3Q12873 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.46□□□□□ -1.86
CHD3Q12873 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CHD3Q12873 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CHD3Q12873 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.46□□□□□ -1.86
CHD3Q12873 MIR218-2-201ENST00000385006 110 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 RAB9AP3-201ENST00000412737 573 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC3.46□□□□□ -1.86
CHD3Q12873 HSPE1P27-201ENST00000430808 296 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 RAB9AP1-201ENST00000449393 573 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.46□□□□□ -1.86
CHD3Q12873 RPS26P28-201ENST00000470806 348 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms