Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ATP5HP2-201ENST00000433885 485 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A4P53420 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.06□□□□□ -1.76
COL4A4P53420 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.06□□□□□ -1.76
COL4A4P53420 AC073387.1-201ENST00000453261 709 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.06□□□□□ -1.76
COL4A4P53420 MYL12AP1-201ENST00000518490 515 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 SETP1-201ENST00000556014 845 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.06□□□□□ -1.76
COL4A4P53420 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.06□□□□□ -1.76
COL4A4P53420 AC092953.2-201ENST00000608000 699 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 AP000255.1-201ENST00000610276 676 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 AC074276.2-201ENST00000619891 348 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.06□□□□□ -1.76
COL4A4P53420 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A4P53420 BDP1P-201ENST00000582658 1990 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 AC233263.6-201ENST00000631132 1963 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A4P53420 Z82217.1-201ENST00000625157 8149 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.05□□□□□ -1.76
COL4A4P53420 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A4P53420 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.05□□□□□ -1.76
COL4A4P53420 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.05□□□□□ -1.76
COL4A4P53420 SNORA48.2-201ENST00000390926 124 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 RN7SKP284-201ENST00000411002 343 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.05□□□□□ -1.76
COL4A4P53420 AC087650.1-201ENST00000431445 468 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 AC127537.2-201ENST00000439258 465 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 RPL23AP12-201ENST00000467573 473 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 AC109458.1-201ENST00000508858 316 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A4P53420 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A4P53420 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.05□□□□□ -1.76
COL4A4P53420 AC026616.1-201ENST00000523157 525 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.05□□□□□ -1.76
COL4A4P53420 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.05□□□□□ -1.76
COL4A4P53420 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
COL4A4P53420 AC005014.3-201ENST00000605985 190 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 AC244258.1-201ENST00000637553 1071 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A4P53420 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A4P53420 AC007823.1-201ENST00000569932 1566 ntBASIC4.05□□□□□ -1.76
COL4A4P53420 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
COL4A4P53420 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A4P53420 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
COL4A4P53420 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.05□□□□□ -1.76
COL4A4P53420 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A4P53420 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL4A4P53420 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A4P53420 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
COL4A4P53420 RPL7P60-201ENST00000397636 735 ntBASIC4.04□□□□□ -1.76
COL4A4P53420 MIR1251-201ENST00000408552 70 ntBASIC4.04□□□□□ -1.76
COL4A4P53420 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.04□□□□□ -1.76
COL4A4P53420 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.04□□□□□ -1.76
COL4A4P53420 AC006511.1-201ENST00000470614 315 ntBASIC4.04□□□□□ -1.76
COL4A4P53420 IGHV3-32-201ENST00000519182 355 ntBASIC4.04□□□□□ -1.76
COL4A4P53420 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.04□□□□□ -1.76
COL4A4P53420 AC084759.1-201ENST00000561168 290 ntBASIC4.04□□□□□ -1.76
COL4A4P53420 TMF1P1-201ENST00000576058 373 ntBASIC4.04□□□□□ -1.76
COL4A4P53420 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.04□□□□□ -1.76
COL4A4P53420 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A4P53420 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.04□□□□□ -1.76
COL4A4P53420 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
COL4A4P53420 MTCO1P46-201ENST00000451639 1491 ntBASIC4.04□□□□□ -1.76
COL4A4P53420 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A4P53420 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL4A4P53420 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.04□□□□□ -1.76
COL4A4P53420 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.04□□□□□ -1.76
COL4A4P53420 AC010300.1-201ENST00000600671 5134 ntBASIC4.04□□□□□ -1.76
COL4A4P53420 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL4A4P53420 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 SNORD9-201ENST00000362566 104 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.03□□□□□ -1.76
COL4A4P53420 DPY19L1P2-201ENST00000426647 915 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 KCTD9P3-201ENST00000434597 1169 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A4P53420 YWHAQP9-201ENST00000445891 512 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AC073587.1-201ENST00000447093 876 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AP001486.1-201ENST00000463339 476 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 RN7SL429P-201ENST00000479090 223 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 RN7SL809P-201ENST00000482040 297 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 RN7SL489P-201ENST00000486185 223 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 RN7SL327P-201ENST00000488659 223 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 RAC1P2-201ENST00000511164 579 ntBASIC4.03□□□□□ -1.76
COL4A4P53420 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.03□□□□□ -1.76
COL4A4P53420 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL4A4P53420 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.03□□□□□ -1.76
COL4A4P53420 AC107294.1-201ENST00000609524 467 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms