Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 UBA52P3-201ENST00000491303 382 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.58□□□□□ -1.68
COL5A3P25940 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.58□□□□□ -1.68
COL5A3P25940 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.58□□□□□ -1.68
COL5A3P25940 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
COL5A3P25940 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.58□□□□□ -1.68
COL5A3P25940 OR5AC4P-202ENST00000642086 985 ntBASIC4.58□□□□□ -1.68
COL5A3P25940 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A3P25940 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
COL5A3P25940 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A3P25940 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
COL5A3P25940 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A3P25940 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.57□□□□□ -1.68
COL5A3P25940 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
COL5A3P25940 IL6STP1-201ENST00000346911 1020 ntBASIC4.57□□□□□ -1.68
COL5A3P25940 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.57□□□□□ -1.68
COL5A3P25940 RPL5P24-201ENST00000463742 885 ntBASIC4.57□□□□□ -1.68
COL5A3P25940 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.57□□□□□ -1.68
COL5A3P25940 HIGD1AP18-201ENST00000520730 278 ntBASIC4.57□□□□□ -1.68
COL5A3P25940 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.57□□□□□ -1.68
COL5A3P25940 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A3P25940 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.57□□□□□ -1.68
COL5A3P25940 MIR7112-201ENST00000616126 65 ntBASIC4.57□□□□□ -1.68
COL5A3P25940 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL5A3P25940 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A3P25940 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A3P25940 MFSD8-233ENST00000641482 4860 ntBASIC4.57□□□□□ -1.68
COL5A3P25940 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
COL5A3P25940 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.56□□□□□ -1.68
COL5A3P25940 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A3P25940 AC092435.3-201ENST00000565538 3654 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A3P25940 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A3P25940 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A3P25940 AC007685.1-201ENST00000329806 452 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL5A3P25940 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.56□□□□□ -1.68
COL5A3P25940 EIF4EP1-201ENST00000422311 642 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.56□□□□□ -1.68
COL5A3P25940 RPS15AP29-201ENST00000445539 400 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.56□□□□□ -1.68
COL5A3P25940 AC012123.2-201ENST00000485809 248 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 RPL21P13-201ENST00000488305 481 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 AC006445.1-201ENST00000491925 405 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.56□□□□□ -1.68
COL5A3P25940 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.56□□□□□ -1.68
COL5A3P25940 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A3P25940 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.56□□□□□ -1.68
COL5A3P25940 AC006116.10-201ENST00000591836 581 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 AC068790.5-201ENST00000602741 355 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A3P25940 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL5A3P25940 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL5A3P25940 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.56□□□□□ -1.68
COL5A3P25940 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.56□□□□□ -1.68
COL5A3P25940 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A3P25940 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
COL5A3P25940 AL031595.2-201ENST00000624215 19071 ntBASIC4.56□□□□□ -1.68
COL5A3P25940 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.55□□□□□ -1.68
COL5A3P25940 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.55□□□□□ -1.68
COL5A3P25940 DPPA2P2-201ENST00000418220 897 ntBASIC4.55□□□□□ -1.68
COL5A3P25940 MIR5004-201ENST00000579078 107 ntBASIC4.55□□□□□ -1.68
COL5A3P25940 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.55□□□□□ -1.68
COL5A3P25940 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.55□□□□□ -1.68
COL5A3P25940 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC4.55□□□□□ -1.68
COL5A3P25940 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.55□□□□□ -1.68
COL5A3P25940 AC097504.1-201ENST00000515103 2415 ntBASIC4.55□□□□□ -1.68
COL5A3P25940 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.55□□□□□ -1.68
COL5A3P25940 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.55□□□□□ -1.68
COL5A3P25940 BMS1P3-201ENST00000372011 932 ntBASIC4.55□□□□□ -1.68
COL5A3P25940 AL034403.1-201ENST00000399414 885 ntBASIC4.55□□□□□ -1.68
COL5A3P25940 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.55□□□□□ -1.68
COL5A3P25940 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.55□□□□□ -1.68
COL5A3P25940 RPL37P3-201ENST00000456825 293 ntBASIC4.55□□□□□ -1.68
COL5A3P25940 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL5A3P25940 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.55□□□□□ -1.68
COL5A3P25940 AC090136.1-201ENST00000520009 240 ntBASIC4.55□□□□□ -1.68
COL5A3P25940 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.55□□□□□ -1.68
COL5A3P25940 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.55□□□□□ -1.68
COL5A3P25940 AC024023.1-201ENST00000624530 922 ntBASIC4.55□□□□□ -1.68
COL5A3P25940 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.55□□□□□ -1.68
COL5A3P25940 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
COL5A3P25940 AL442128.2-201ENST00000620246 1824 ntBASIC4.54□□□□□ -1.68
COL5A3P25940 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
COL5A3P25940 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
COL5A3P25940 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.54□□□□□ -1.68
COL5A3P25940 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 RNA5SP374-201ENST00000362939 125 ntBASIC4.54□□□□□ -1.68
COL5A3P25940 SNORA48.5-201ENST00000391143 135 ntBASIC4.54□□□□□ -1.68
COL5A3P25940 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.54□□□□□ -1.68
COL5A3P25940 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.54□□□□□ -1.68
COL5A3P25940 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL5A3P25940 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.54□□□□□ -1.68
COL5A3P25940 SUMO2P20-201ENST00000520803 283 ntBASIC4.54□□□□□ -1.68
COL5A3P25940 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.54□□□□□ -1.68
COL5A3P25940 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms