Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSH3P20585 AC017104.4-201ENST00000636283 1592 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AL137100.1-201ENST00000556703 1620 ntBASIC4.43□□□□□ -1.7
MSH3P20585 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH3P20585 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH3P20585 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 RNU6-666P-201ENST00000363499 107 ntBASIC4.42□□□□□ -1.7
MSH3P20585 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 U6.112-201ENST00000384129 70 ntBASIC4.42□□□□□ -1.7
MSH3P20585 MIR320B1-201ENST00000390209 79 ntBASIC4.42□□□□□ -1.7
MSH3P20585 ANAPC10P1-201ENST00000395991 556 ntBASIC4.42□□□□□ -1.7
MSH3P20585 NCSTNP1-201ENST00000406229 144 ntBASIC4.42□□□□□ -1.7
MSH3P20585 SNRPFP1-201ENST00000414761 252 ntBASIC4.42□□□□□ -1.7
MSH3P20585 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH3P20585 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 DNAJC19P7-201ENST00000428811 344 ntBASIC4.42□□□□□ -1.7
MSH3P20585 AC068287.1-201ENST00000430283 295 ntBASIC4.42□□□□□ -1.7
MSH3P20585 AC011998.1-201ENST00000433403 117 ntBASIC4.42□□□□□ -1.7
MSH3P20585 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH3P20585 AL358794.1-201ENST00000445689 381 ntBASIC4.42□□□□□ -1.7
MSH3P20585 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 GTF2IP12-201ENST00000456547 356 ntBASIC4.42□□□□□ -1.7
MSH3P20585 AC090013.1-201ENST00000485147 480 ntBASIC4.42□□□□□ -1.7
MSH3P20585 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH3P20585 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 IGLVIV-65-201ENST00000517313 360 ntBASIC4.42□□□□□ -1.7
MSH3P20585 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.42□□□□□ -1.7
MSH3P20585 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.42□□□□□ -1.7
MSH3P20585 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 MTATP6P24-201ENST00000576835 677 ntBASIC4.42□□□□□ -1.7
MSH3P20585 MIR4715-201ENST00000584117 79 ntBASIC4.42□□□□□ -1.7
MSH3P20585 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH3P20585 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 AL157392.4-201ENST00000609756 345 ntBASIC4.42□□□□□ -1.7
MSH3P20585 AC012409.3-201ENST00000611343 981 ntBASIC4.42□□□□□ -1.7
MSH3P20585 AC011472.4-201ENST00000615848 491 ntBASIC4.42□□□□□ -1.7
MSH3P20585 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
MSH3P20585 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC4.42□□□□□ -1.7
MSH3P20585 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
MSH3P20585 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.42□□□□□ -1.7
MSH3P20585 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.42□□□□□ -1.7
MSH3P20585 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSH3P20585 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.41□□□□□ -1.7
MSH3P20585 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH3P20585 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH3P20585 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
MSH3P20585 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
MSH3P20585 RNU1-108P-201ENST00000362556 161 ntBASIC4.41□□□□□ -1.7
MSH3P20585 RNA5SP151-201ENST00000365632 117 ntBASIC4.41□□□□□ -1.7
MSH3P20585 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
MSH3P20585 RNU6-452P-201ENST00000384406 107 ntBASIC4.41□□□□□ -1.7
MSH3P20585 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
MSH3P20585 RNU6-932P-201ENST00000391108 106 ntBASIC4.41□□□□□ -1.7
MSH3P20585 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSH3P20585 AL603865.2-201ENST00000401679 213 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AL121834.1-202ENST00000404494 277 ntBASIC4.41□□□□□ -1.7
MSH3P20585 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSH3P20585 USP9YP21-201ENST00000420603 432 ntBASIC4.41□□□□□ -1.7
MSH3P20585 EIF4EP1-201ENST00000422311 642 ntBASIC4.41□□□□□ -1.7
MSH3P20585 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH3P20585 AC009480.2-201ENST00000422916 432 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 AL357520.1-201ENST00000441557 453 ntBASIC4.41□□□□□ -1.7
MSH3P20585 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.41□□□□□ -1.7
MSH3P20585 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.41□□□□□ -1.7
MSH3P20585 AC092685.1-201ENST00000447960 1243 ntBASIC4.41□□□□□ -1.7
MSH3P20585 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.41□□□□□ -1.7
MSH3P20585 AC098826.2-201ENST00000452011 651 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC4.41□□□□□ -1.7
MSH3P20585 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.41□□□□□ -1.7
MSH3P20585 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.41□□□□□ -1.7
MSH3P20585 AC006463.2-201ENST00000473326 348 ntBASIC4.41□□□□□ -1.7
MSH3P20585 RN7SL459P-201ENST00000481078 302 ntBASIC4.41□□□□□ -1.7
MSH3P20585 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms