Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL6A3P12111 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL6A3P12111 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL6A3P12111 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL6A3P12111 AC007656.2-201ENST00000624902 4547 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.74□□□□□ -1.81
COL6A3P12111 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
COL6A3P12111 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
COL6A3P12111 FAM133CP-201ENST00000332869 704 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 RSL24D1P4-201ENST00000400938 484 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 RAP1BP1-201ENST00000412709 553 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.74□□□□□ -1.81
COL6A3P12111 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.74□□□□□ -1.81
COL6A3P12111 AC008802.1-201ENST00000519121 791 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC3.74□□□□□ -1.81
COL6A3P12111 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL6A3P12111 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
COL6A3P12111 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL6A3P12111 RNA5SP197-201ENST00000363357 119 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 AL450338.1-201ENST00000407987 512 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 AL031736.2-201ENST00000426573 787 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL6A3P12111 AC008885.1-201ENST00000514930 301 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.74□□□□□ -1.81
COL6A3P12111 RNVU1-4-201ENST00000612985 164 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 AC241585.2-209ENST00000638217 143 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC3.74□□□□□ -1.81
COL6A3P12111 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
COL6A3P12111 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.74□□□□□ -1.81
COL6A3P12111 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.74□□□□□ -1.81
COL6A3P12111 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.73□□□□□ -1.81
COL6A3P12111 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.73□□□□□ -1.81
COL6A3P12111 AC022080.3-201ENST00000544433 482 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 AC245100.7-201ENST00000609678 442 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.73□□□□□ -1.81
COL6A3P12111 NAMPTP1-201ENST00000440465 2514 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC3.73□□□□□ -1.81
COL6A3P12111 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL6A3P12111 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 SEPT7P2-202ENST00000398921 823 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.73□□□□□ -1.81
COL6A3P12111 AC084198.1-201ENST00000477747 402 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.73□□□□□ -1.81
COL6A3P12111 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.73□□□□□ -1.81
COL6A3P12111 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC3.73□□□□□ -1.81
COL6A3P12111 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC3.73□□□□□ -1.81
COL6A3P12111 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL6A3P12111 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.73□□□□□ -1.81
COL6A3P12111 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.73□□□□□ -1.81
COL6A3P12111 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
COL6A3P12111 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL6A3P12111 OR13C3-201ENST00000374781 1108 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 GNG5P5-201ENST00000420444 220 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 AL513174.1-201ENST00000423182 629 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 AC006028.1-201ENST00000438379 402 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.73□□□□□ -1.81
COL6A3P12111 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.73□□□□□ -1.81
COL6A3P12111 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.73□□□□□ -1.81
COL6A3P12111 NPM1P5-201ENST00000557228 838 ntBASIC3.73□□□□□ -1.81
COL6A3P12111 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL6A3P12111 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL6A3P12111 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A3P12111 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
COL6A3P12111 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A3P12111 RPS23P10-201ENST00000416185 486 ntBASIC3.72□□□□□ -1.81
COL6A3P12111 MAPRE1P3-201ENST00000435438 796 ntBASIC3.72□□□□□ -1.81
COL6A3P12111 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.72□□□□□ -1.81
COL6A3P12111 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.72□□□□□ -1.81
COL6A3P12111 AC109925.1-201ENST00000478069 331 ntBASIC3.72□□□□□ -1.81
COL6A3P12111 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.72□□□□□ -1.81
COL6A3P12111 AC063950.1-201ENST00000552036 308 ntBASIC3.72□□□□□ -1.81
COL6A3P12111 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.72□□□□□ -1.81
COL6A3P12111 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
COL6A3P12111 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.72□□□□□ -1.81
COL6A3P12111 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.72□□□□□ -1.81
COL6A3P12111 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.72□□□□□ -1.81
COL6A3P12111 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.72□□□□□ -1.81
COL6A3P12111 AC010374.2-201ENST00000512933 535 ntBASIC3.72□□□□□ -1.81
COL6A3P12111 IGKV2-26-201ENST00000518305 343 ntBASIC3.72□□□□□ -1.81
COL6A3P12111 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A3P12111 MIR7851-201ENST00000610611 160 ntBASIC3.72□□□□□ -1.81
COL6A3P12111 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A3P12111 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
COL6A3P12111 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A3P12111 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
COL6A3P12111 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.72□□□□□ -1.81
COL6A3P12111 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL6A3P12111 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
COL6A3P12111 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL6A3P12111 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL6A3P12111 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
COL6A3P12111 AC007685.1-201ENST00000329806 452 ntBASIC3.71□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms