Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
VPS4BO75351 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.12□□□□□ -1.59
VPS4BO75351 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS4BO75351 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS4BO75351 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS4BO75351 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS4BO75351 CR381670.1-201ENST00000624291 1693 ntBASIC5.12□□□□□ -1.59
VPS4BO75351 AC087359.1-201ENST00000508335 1740 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
VPS4BO75351 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
VPS4BO75351 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS4BO75351 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS4BO75351 FABP12P1-201ENST00000401911 322 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AL355379.1-201ENST00000405542 640 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 CTSL3P-202ENST00000412179 788 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AL031779.1-201ENST00000415663 330 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AL121878.1-201ENST00000418638 859 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AC093162.1-201ENST00000419682 124 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AL022400.1-201ENST00000423946 935 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS4BO75351 AC073069.1-201ENST00000428657 441 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS4BO75351 CBX1P4-201ENST00000439415 457 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AC019185.1-201ENST00000442718 389 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AL591363.1-201ENST00000450091 483 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 RN7SL189P-201ENST00000468631 289 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 RPL23AP71-201ENST00000470966 469 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 SETP11-201ENST00000473027 690 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS4BO75351 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS4BO75351 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS4BO75351 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS4BO75351 GSTP1P1-201ENST00000548078 319 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AC004217.3-201ENST00000551552 878 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 PCNPP1-201ENST00000552501 511 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC5.11□□□□□ -1.59
VPS4BO75351 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS4BO75351 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS4BO75351 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS4BO75351 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS4BO75351 MIR4675-201ENST00000577898 77 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AP005262.1-201ENST00000582646 997 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.11□□□□□ -1.59
VPS4BO75351 AC007494.3-201ENST00000624660 743 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS4BO75351 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 SMG1P4-204ENST00000523028 4131 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.11□□□□□ -1.59
VPS4BO75351 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 AC004817.4-201ENST00000602396 3625 ntBASIC5.11□□□□□ -1.59
VPS4BO75351 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
VPS4BO75351 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS4BO75351 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS4BO75351 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS4BO75351 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS4BO75351 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS4BO75351 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS4BO75351 Y_RNA.311-201ENST00000365068 96 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 OR52E6-202ENST00000379946 954 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 SNORA51.12-201ENST00000384448 134 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
VPS4BO75351 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS4BO75351 AL161909.1-201ENST00000397390 712 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
VPS4BO75351 RNA5SP487-201ENST00000410186 122 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 AL390774.1-201ENST00000411924 246 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 AC211486.3-201ENST00000412694 621 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS4BO75351 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS4BO75351 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.1□□□□□ -1.59
VPS4BO75351 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS4BO75351 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS4BO75351 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.1□□□□□ -1.59
VPS4BO75351 CEACAMP9-201ENST00000442990 513 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 AL034418.1-201ENST00000448675 860 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
VPS4BO75351 VN1R32P-201ENST00000452234 905 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 RPL23AP12-201ENST00000467573 473 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 Z99496.1-201ENST00000469424 1477 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 RPL5P22-201ENST00000480199 884 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 AC058823.1-201ENST00000485315 474 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 NIFKP7-201ENST00000503365 834 ntBASIC5.1□□□□□ -1.59
VPS4BO75351 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC5.1□□□□□ -1.59
VPS4BO75351 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.1□□□□□ -1.59
VPS4BO75351 TCP11X3P-202ENST00000514289 1254 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms