Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHOX2O60902 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHOX2O60902 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.98□□□□□ -1.77
SHOX2O60902 AL389915.1-201ENST00000422463 466 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 RPL31P12-201ENST00000422587 358 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC3.98□□□□□ -1.77
SHOX2O60902 RSL24D1P6-201ENST00000426934 401 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.98□□□□□ -1.77
SHOX2O60902 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.98□□□□□ -1.77
SHOX2O60902 NDUFS5P3-201ENST00000450668 321 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 OR6C72P-201ENST00000451403 892 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 AC069277.2-201ENST00000454211 432 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 AC022336.1-201ENST00000475510 337 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SHOX2O60902 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.98□□□□□ -1.77
SHOX2O60902 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC3.98□□□□□ -1.77
SHOX2O60902 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC3.98□□□□□ -1.77
SHOX2O60902 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.98□□□□□ -1.77
SHOX2O60902 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC3.98□□□□□ -1.77
SHOX2O60902 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.98□□□□□ -1.77
SHOX2O60902 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.98□□□□□ -1.77
SHOX2O60902 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.98□□□□□ -1.77
SHOX2O60902 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.98□□□□□ -1.77
SHOX2O60902 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC3.98□□□□□ -1.77
SHOX2O60902 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC3.98□□□□□ -1.77
SHOX2O60902 RN7SL690P-201ENST00000582087 240 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 AC069061.3-201ENST00000582254 823 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.98□□□□□ -1.77
SHOX2O60902 SNX6P1-201ENST00000601728 1224 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 AC068790.4-201ENST00000602474 263 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.98□□□□□ -1.77
SHOX2O60902 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.98□□□□□ -1.77
SHOX2O60902 AC116447.1-201ENST00000613153 453 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 uc_338.13-201ENST00000618243 179 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.98□□□□□ -1.77
SHOX2O60902 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SHOX2O60902 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHOX2O60902 AC015813.6-201ENST00000624409 5808 ntBASIC3.98□□□□□ -1.77
SHOX2O60902 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHOX2O60902 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SHOX2O60902 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.98□□□□□ -1.77
SHOX2O60902 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHOX2O60902 AC009313.2-201ENST00000417893 1941 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHOX2O60902 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC3.97□□□□□ -1.77
SHOX2O60902 RAD1P1-201ENST00000231383 813 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 RN7SKP44-201ENST00000363602 316 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 SNORD113.2-201ENST00000364166 89 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 RN7SKP235-201ENST00000410662 305 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 RPL6P29-201ENST00000414863 865 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 UQCRBP1-201ENST00000421129 336 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.97□□□□□ -1.77
SHOX2O60902 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.97□□□□□ -1.77
SHOX2O60902 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.97□□□□□ -1.77
SHOX2O60902 AC122718.1-201ENST00000439448 744 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC006011.1-201ENST00000442758 349 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.97□□□□□ -1.77
SHOX2O60902 NDUFA12P1-201ENST00000455914 406 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 FAM133DP-201ENST00000464802 691 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SHOX2O60902 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.97□□□□□ -1.77
SHOX2O60902 SUMO2P20-201ENST00000520803 283 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.97□□□□□ -1.77
SHOX2O60902 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SHOX2O60902 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.97□□□□□ -1.77
SHOX2O60902 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.97□□□□□ -1.77
SHOX2O60902 AC090515.3-201ENST00000560431 315 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.97□□□□□ -1.77
SHOX2O60902 AC093227.2-201ENST00000589357 285 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC011492.1-201ENST00000600023 315 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC123786.2-201ENST00000603459 275 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AL451044.1-201ENST00000604867 238 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC019131.2-201ENST00000609071 870 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC034229.5-201ENST00000624258 185 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC020978.9-201ENST00000624380 1141 ntBASIC3.97□□□□□ -1.77
SHOX2O60902 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC3.97□□□□□ -1.77
SHOX2O60902 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SHOX2O60902 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.97□□□□□ -1.77
SHOX2O60902 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SHOX2O60902 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.97□□□□□ -1.77
SHOX2O60902 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.97□□□□□ -1.77
SHOX2O60902 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHOX2O60902 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
SHOX2O60902 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
SHOX2O60902 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.96□□□□□ -1.77
SHOX2O60902 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.96□□□□□ -1.77
SHOX2O60902 CASC19-284ENST00000642142 1868 ntBASIC3.96□□□□□ -1.77
SHOX2O60902 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.96□□□□□ -1.77
SHOX2O60902 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
SHOX2O60902 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.96□□□□□ -1.77
SHOX2O60902 AC006971.1-201ENST00000407916 4486 ntBASIC3.96□□□□□ -1.77
SHOX2O60902 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SHOX2O60902 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SHOX2O60902 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SHOX2O60902 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SHOX2O60902 AC009229.4-201ENST00000623854 1947 ntBASIC3.96□□□□□ -1.78
SHOX2O60902 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SHOX2O60902 RNU1-14P-201ENST00000362759 152 ntBASIC3.96□□□□□ -1.78
SHOX2O60902 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms