Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 RN7SL563P-201ENST00000481233 298 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC008040.4-201ENST00000494834 768 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC074198.2-201ENST00000508153 258 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 NACAP6-201ENST00000509572 622 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC138866.1-201ENST00000514522 497 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AP000648.1-201ENST00000529682 397 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC087277.1-201ENST00000529910 535 ntTSL 3 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC044860.3-201ENST00000559957 368 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 MIR3941-201ENST00000582572 103 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 MIR5692C1-201ENST00000585309 91 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AL355877.2-201ENST00000603670 358 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AL121809.2-201ENST00000613169 341 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AL365265.1-201ENST00000621045 234 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AL450472.1-202ENST00000637286 180 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 HSPA8P18-201ENST00000439846 1928 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC007996.1-201ENST00000620414 2821 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 MAK-202ENST00000354489 3941 ntTSL 5 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC139491.2-201ENST00000515403 3632 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 INSL5-201ENST00000304526 715 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RNU6-1287P-201ENST00000362914 107 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 Y_RNA.84-201ENST00000363011 104 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 Y_RNA.199-201ENST00000364014 102 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RN7SKP171-201ENST00000364417 303 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 Y_RNA.304-201ENST00000365011 112 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 SNORD115-7-201ENST00000365306 82 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RFX3-203ENST00000381984 364 ntTSL 3 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RNU6-1060P-201ENST00000384664 107 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC096920.1-201ENST00000423991 241 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RPL7P37-201ENST00000425095 738 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RPL21P112-201ENST00000434403 463 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 OR3D1P-201ENST00000438288 955 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AL031659.1-201ENST00000447075 539 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RPL7P17-201ENST00000470927 724 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC097486.1-201ENST00000515331 210 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RPS27AP18-201ENST00000515536 459 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 RNU6-1332P-201ENST00000516666 104 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC006600.1-201ENST00000572529 153 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 LARP7P2-201ENST00000575306 125 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC073410.2-201ENST00000603240 332 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC108451.2-201ENST00000603875 538 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC018445.2-201ENST00000622987 260 ntBASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 PFKM-232ENST00000629846 381 ntTSL 4 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 CR1-203ENST00000367051 7469 ntTSL 5 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC7.23□□□□□ -1.25
VPS9D1Q9Y2B5 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms