Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6-1151P-201ENST00000384684 107 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 AL049697.2-201ENST00000403708 294 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 ATP5G1P3-201ENST00000463301 410 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 HMGB1P38-201ENST00000490557 577 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 RPL36AP41-201ENST00000493820 306 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC093720.1-201ENST00000505681 714 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC090071.1-201ENST00000507713 644 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 NIFKP8-201ENST00000560500 874 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 BPTFP1-201ENST00000579209 492 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC073091.2-201ENST00000603205 907 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC112503.1-201ENST00000608436 391 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 RNU6-156P-201ENST00000621869 107 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 MAPK10-349ENST00000641767 3661 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 MAPK10-286ENST00000641208 8747 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC074029.4-201ENST00000624796 1859 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC108751.5-201ENST00000492880 1336 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 MTND4P9-201ENST00000507819 1346 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 HSPD1P14-201ENST00000432666 1618 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC016716.1-201ENST00000265882 708 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 RPL7P27-201ENST00000403775 720 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 RNA5SP146-201ENST00000410743 123 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC096533.1-201ENST00000411645 353 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 OR51B3P-201ENST00000412287 913 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 CEACAMP8-201ENST00000413902 580 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 PAICSP7-201ENST00000419829 962 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 NPM1P34-201ENST00000428821 893 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC234064.1-201ENST00000436312 247 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 ARL2BPP10-201ENST00000446487 531 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC108463.1-201ENST00000450258 347 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC006463.2-201ENST00000473326 348 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC104763.1-201ENST00000475274 360 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC111000.3-201ENST00000508057 576 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC079075.1-201ENST00000559543 878 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC105129.1-201ENST00000560250 297 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AC017100.2-201ENST00000584628 355 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AL359535.1-201ENST00000612100 1087 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 VN1R74P-201ENST00000613259 503 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 U3.53-201ENST00000628922 216 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS28Q9UK41 AL356118.1-201ENST00000635272 1078 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 ERCC6-202ENST00000374127 1782 ntBASIC4.77□□□□□ -1.65
VPS28Q9UK41 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS28Q9UK41 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms