Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.12□□□□□ -1.75
PDLIM3Q53GG5 MTND4P31-201ENST00000425607 1343 ntBASIC4.12□□□□□ -1.75
PDLIM3Q53GG5 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PDLIM3Q53GG5 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.12□□□□□ -1.75
PDLIM3Q53GG5 AC111188.2-201ENST00000529697 1387 ntBASIC4.12□□□□□ -1.75
PDLIM3Q53GG5 USP9YP4-201ENST00000424401 1745 ntBASIC4.12□□□□□ -1.75
PDLIM3Q53GG5 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.12□□□□□ -1.75
PDLIM3Q53GG5 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AL353743.4-201ENST00000422653 1547 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 SNORD116-12-201ENST00000384468 92 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 MIR105-1-201ENST00000385222 81 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 MIR708-201ENST00000390708 88 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC234782.4-201ENST00000417646 1048 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 MTND4P3-201ENST00000417829 541 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 DYNLL1P7-201ENST00000429273 258 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 CEACAMP1-201ENST00000434624 1035 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 RPS29P10-201ENST00000439197 166 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AL031313.1-201ENST00000448435 256 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 S100A11P1-201ENST00000477525 312 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC090686.1-201ENST00000481577 749 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC079203.1-201ENST00000487972 404 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 OR7H2P-201ENST00000513483 306 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 RN7SKP122-201ENST00000515923 296 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 RNA5SP249-201ENST00000516127 99 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC012400.1-201ENST00000518452 381 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 MIR3160-1-201ENST00000577972 85 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 RBM22P1-201ENST00000578589 1214 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AP001160.4-201ENST00000596971 382 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC090527.3-201ENST00000619041 548 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AL035461.2-201ENST00000619201 524 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AL136964.1-201ENST00000622038 2990 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AL359757.1-201ENST00000623176 255 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AC099494.2-201ENST00000623371 978 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 ZNF663P-202ENST00000641770 1131 ntBASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PDLIM3Q53GG5 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC126323.6-202ENST00000568092 3511 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 UBBP2-201ENST00000376781 231 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 MIR1182-201ENST00000408363 97 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 RPS3AP25-201ENST00000411660 793 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 LIPT1P1-201ENST00000415870 1186 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 C1DP1-201ENST00000426049 402 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 MTCYBP15-201ENST00000433123 1127 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 GTF2IP3-201ENST00000433887 494 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 RPS7P5-201ENST00000441482 581 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 YWHAQP9-201ENST00000445891 512 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL050341.1-201ENST00000447743 313 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 OFD1P3Y-201ENST00000453312 783 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC092155.2-201ENST00000454675 477 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms