Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.82□□□□□ -1.64
USP41Q3LFD5 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC091163.3-201ENST00000518269 1144 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.82□□□□□ -1.64
USP41Q3LFD5 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC022882.1-201ENST00000532142 501 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.82□□□□□ -1.64
USP41Q3LFD5 AL109766.1-201ENST00000555080 552 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 PSMB7P1-201ENST00000556349 514 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC027104.1-201ENST00000563702 681 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.82□□□□□ -1.64
USP41Q3LFD5 AL020997.2-201ENST00000602607 184 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.82□□□□□ -1.64
USP41Q3LFD5 AP001005.3-201ENST00000622049 129 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 AP000843.1-201ENST00000624880 701 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC006065.6-201ENST00000625201 545 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 U6.107-201ENST00000637108 79 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 AC090017.1-201ENST00000548612 1779 ntBASIC4.82□□□□□ -1.64
USP41Q3LFD5 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
USP41Q3LFD5 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP41Q3LFD5 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USP41Q3LFD5 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
USP41Q3LFD5 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP41Q3LFD5 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 OR5P1P-201ENST00000299512 925 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 ENSAP3-201ENST00000312710 333 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 RNU6-543P-201ENST00000362576 108 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 RNA5SP479-201ENST00000364858 117 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 AL080315.1-201ENST00000406055 466 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC092638.1-201ENST00000411966 1275 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 RPL21P108-201ENST00000413857 481 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 ACTR3P2-201ENST00000439585 1257 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 RPL23AP43-201ENST00000446445 471 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC073587.1-201ENST00000447093 876 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 NUTF2P3-201ENST00000448540 384 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 EXOSC3P1-201ENST00000448649 500 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 OR51B8P-201ENST00000449892 769 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 RPL7P32-201ENST00000457119 744 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 RPL7AP28-201ENST00000464513 571 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 RN7SL41P-201ENST00000476144 297 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 RN7SL817P-201ENST00000480777 288 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 RNA5SP360-201ENST00000516555 118 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AP002812.4-201ENST00000532139 286 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC011477.5-201ENST00000586571 259 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 IPO5P1-202ENST00000600039 287 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC125494.3-201ENST00000602759 455 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC073387.2-201ENST00000604797 784 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 ARF4P1-201ENST00000605447 541 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC023043.4-201ENST00000612081 449 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC015726.3-201ENST00000624501 418 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC139713.2-210ENST00000641741 992 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 SEC63P2-201ENST00000503863 1939 ntBASIC4.81□□□□□ -1.64
USP41Q3LFD5 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
USP41Q3LFD5 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP41Q3LFD5 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP41Q3LFD5 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.8□□□□□ -1.64
USP41Q3LFD5 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USP41Q3LFD5 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.8□□□□□ -1.64
USP41Q3LFD5 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP41Q3LFD5 AC000123.3-201ENST00000624029 4975 ntBASIC4.8□□□□□ -1.64
USP41Q3LFD5 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
USP41Q3LFD5 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP41Q3LFD5 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
USP41Q3LFD5 CPHL1P-201ENST00000461341 3407 ntBASIC4.8□□□□□ -1.64
USP41Q3LFD5 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.8□□□□□ -1.64
USP41Q3LFD5 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.8□□□□□ -1.64
USP41Q3LFD5 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP41Q3LFD5 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP41Q3LFD5 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
USP41Q3LFD5 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP41Q3LFD5 RNU1-130P-201ENST00000363930 160 ntBASIC4.8□□□□□ -1.64
USP41Q3LFD5 SNORA70C-201ENST00000384538 135 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms