Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.82□□□□□ -1.64
COL18A1P39060 MIR6852-201ENST00000621699 66 ntBASIC4.82□□□□□ -1.64
COL18A1P39060 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.82□□□□□ -1.64
COL18A1P39060 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.82□□□□□ -1.64
COL18A1P39060 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.82□□□□□ -1.64
COL18A1P39060 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL18A1P39060 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
COL18A1P39060 HDGFP1-201ENST00000405943 252 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 MIR1289-1-201ENST00000408836 144 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.81□□□□□ -1.64
COL18A1P39060 AC006480.1-201ENST00000449887 378 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.81□□□□□ -1.64
COL18A1P39060 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.81□□□□□ -1.64
COL18A1P39060 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.81□□□□□ -1.64
COL18A1P39060 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC4.81□□□□□ -1.64
COL18A1P39060 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.81□□□□□ -1.64
COL18A1P39060 MIR4513-201ENST00000581077 86 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 AC015722.2-201ENST00000622210 551 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL18A1P39060 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.81□□□□□ -1.64
COL18A1P39060 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
COL18A1P39060 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL18A1P39060 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL18A1P39060 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
COL18A1P39060 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL18A1P39060 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.81□□□□□ -1.64
COL18A1P39060 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL18A1P39060 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL18A1P39060 RNA5SP306-201ENST00000411087 107 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.81□□□□□ -1.64
COL18A1P39060 AL136126.1-201ENST00000473603 402 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.81□□□□□ -1.64
COL18A1P39060 RN7SKP83-201ENST00000516512 178 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.81□□□□□ -1.64
COL18A1P39060 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.81□□□□□ -1.64
COL18A1P39060 AC069209.1-201ENST00000619282 651 ntBASIC4.81□□□□□ -1.64
COL18A1P39060 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL18A1P39060 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.8□□□□□ -1.64
COL18A1P39060 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
COL18A1P39060 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL18A1P39060 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL18A1P39060 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
COL18A1P39060 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL18A1P39060 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL18A1P39060 RN7SKP53-201ENST00000411337 315 ntBASIC4.8□□□□□ -1.64
COL18A1P39060 HMGB3P20-201ENST00000417997 600 ntBASIC4.8□□□□□ -1.64
COL18A1P39060 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL18A1P39060 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.8□□□□□ -1.64
COL18A1P39060 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL18A1P39060 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.8□□□□□ -1.64
COL18A1P39060 AL133383.2-201ENST00000622958 2336 ntBASIC4.8□□□□□ -1.64
COL18A1P39060 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL18A1P39060 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.8□□□□□ -1.64
COL18A1P39060 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL18A1P39060 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL18A1P39060 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL18A1P39060 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL18A1P39060 IL6STP1-201ENST00000346911 1020 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.79□□□□□ -1.64
COL18A1P39060 AL691447.1-201ENST00000419456 387 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 AC006994.1-201ENST00000438212 839 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 RPL26P28-201ENST00000451325 435 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL18A1P39060 RPL21P13-201ENST00000488305 481 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 UBA52P3-201ENST00000491303 382 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.79□□□□□ -1.64
COL18A1P39060 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.79□□□□□ -1.64
COL18A1P39060 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.79□□□□□ -1.64
COL18A1P39060 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.79□□□□□ -1.64
COL18A1P39060 AL513477.2-201ENST00000607858 568 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.79□□□□□ -1.64
COL18A1P39060 U4.6-201ENST00000621618 127 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 OR5AC4P-202ENST00000642086 985 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 IPO8P1-201ENST00000455509 3109 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL18A1P39060 MTCO1P46-201ENST00000451639 1491 ntBASIC4.79□□□□□ -1.64
COL18A1P39060 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL18A1P39060 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL18A1P39060 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.79□□□□□ -1.64
COL18A1P39060 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL18A1P39060 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.78□□□□□ -1.64
COL18A1P39060 AC091862.1-201ENST00000438016 1100 ntBASIC4.78□□□□□ -1.64
COL18A1P39060 RNU6-513P-201ENST00000516104 104 ntBASIC4.78□□□□□ -1.64
COL18A1P39060 AC006116.10-201ENST00000591836 581 ntBASIC4.78□□□□□ -1.64
COL18A1P39060 PCA3_2.1-201ENST00000612507 409 ntBASIC4.78□□□□□ -1.64
COL18A1P39060 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.78□□□□□ -1.64
COL18A1P39060 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC4.78□□□□□ -1.64
COL18A1P39060 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL18A1P39060 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL18A1P39060 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.78□□□□□ -1.64
COL18A1P39060 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms