Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL590609.2-201ENST00000421430 368 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX1P28360 AC091390.2-201ENST00000432573 374 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 AC012075.1-201ENST00000436549 580 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AF228730.2-201ENST00000438784 848 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AL138899.2-201ENST00000439139 499 ntBASIC6.27□□□□□ -1.41
MSX1P28360 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX1P28360 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX1P28360 RPS24P6-201ENST00000452670 400 ntBASIC6.27□□□□□ -1.41
MSX1P28360 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 AC002075.1-201ENST00000457396 676 ntBASIC6.27□□□□□ -1.41
MSX1P28360 MIR2053-201ENST00000459295 91 ntBASIC6.27□□□□□ -1.41
MSX1P28360 RN7SL168P-201ENST00000463821 279 ntBASIC6.27□□□□□ -1.41
MSX1P28360 RPL7L1P8-201ENST00000469911 741 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AL355032.1-201ENST00000472981 438 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 AC098818.1-201ENST00000478593 252 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX1P28360 MYL12AP1-201ENST00000518490 515 ntBASIC6.27□□□□□ -1.41
MSX1P28360 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX1P28360 AP000907.2-201ENST00000530827 353 ntBASIC6.27□□□□□ -1.41
MSX1P28360 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
MSX1P28360 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC6.27□□□□□ -1.41
MSX1P28360 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.27□□□□□ -1.41
MSX1P28360 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 MIR4790-201ENST00000577799 79 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 MIR4424-201ENST00000585257 86 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AL353997.4-201ENST00000586196 166 ntBASIC6.27□□□□□ -1.41
MSX1P28360 AF038458.1-201ENST00000588406 262 ntBASIC6.27□□□□□ -1.41
MSX1P28360 GLUD1P4-201ENST00000590914 418 ntBASIC6.27□□□□□ -1.41
MSX1P28360 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.27□□□□□ -1.41
MSX1P28360 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC6.27□□□□□ -1.41
MSX1P28360 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.27□□□□□ -1.41
MSX1P28360 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 AC119674.1-204ENST00000641348 1343 ntBASIC6.26□□□□□ -1.41
MSX1P28360 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 AC022819.1-201ENST00000563495 3910 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 DLEU2L-201ENST00000371086 3555 ntBASIC6.26□□□□□ -1.41
MSX1P28360 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
MSX1P28360 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
MSX1P28360 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 AP000547.3-204ENST00000588548 2523 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX1P28360 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 RN7SKP187-201ENST00000365536 330 ntBASIC6.26□□□□□ -1.41
MSX1P28360 RNU6-903P-201ENST00000391270 109 ntBASIC6.26□□□□□ -1.41
MSX1P28360 MIR541-201ENST00000401360 84 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX1P28360 RPL7L1P10-201ENST00000427790 463 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 RPL23AP74-201ENST00000437246 471 ntBASIC6.26□□□□□ -1.41
MSX1P28360 CBX1P4-201ENST00000439415 457 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AC083855.1-201ENST00000440041 258 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AL031681.1-201ENST00000443304 400 ntBASIC6.26□□□□□ -1.41
MSX1P28360 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 RPS18P1-201ENST00000447840 458 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX1P28360 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms