Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 Z73417.1-201ENST00000447373 778 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 VN1R40P-201ENST00000455196 941 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AC107401.1-201ENST00000503426 685 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 PARP4P3-201ENST00000510265 317 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.51□□□□□ -1.53
COL3A1P02461 RNU6-311P-201ENST00000516224 102 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 MTCYBP20-201ENST00000524239 1129 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.51□□□□□ -1.53
COL3A1P02461 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
COL3A1P02461 RNU4-89P-201ENST00000607443 133 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AL031667.3-201ENST00000620124 655 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.51□□□□□ -1.53
COL3A1P02461 MFSD8-220ENST00000641243 1422 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
COL3A1P02461 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
COL3A1P02461 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL3A1P02461 AL607077.1-201ENST00000401718 499 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AL138880.1-201ENST00000405824 642 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.51□□□□□ -1.53
COL3A1P02461 AC013268.2-201ENST00000420753 337 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AC010099.3-201ENST00000423896 409 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AC073335.1-201ENST00000427776 363 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.51□□□□□ -1.53
COL3A1P02461 RPL5P32-201ENST00000454085 879 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 snoU13.22-201ENST00000459428 104 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AC034236.1-201ENST00000469891 373 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC5.51□□□□□ -1.53
COL3A1P02461 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 YPEL5P3-201ENST00000547227 352 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC5.51□□□□□ -1.53
COL3A1P02461 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC5.51□□□□□ -1.53
COL3A1P02461 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC5.51□□□□□ -1.53
COL3A1P02461 VN1R85P-201ENST00000601587 426 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 Z99497.2-201ENST00000603634 310 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 CYCSP41-201ENST00000616920 296 ntBASIC5.51□□□□□ -1.53
COL3A1P02461 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.51□□□□□ -1.53
COL3A1P02461 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.51□□□□□ -1.53
COL3A1P02461 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL3A1P02461 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.51□□□□□ -1.53
COL3A1P02461 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 MAPK10-372ENST00000641954 3413 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL3A1P02461 RLIMP1-201ENST00000339626 1680 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
COL3A1P02461 AL138820.1-201ENST00000617901 5305 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 AC027228.2-201ENST00000567141 2154 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 RNA5SP283-201ENST00000365604 119 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL3A1P02461 AP000357.1-201ENST00000409926 1165 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 MTATP6P20-201ENST00000414147 562 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 AL161631.1-201ENST00000417933 486 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.5□□□□□ -1.53
COL3A1P02461 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC5.5□□□□□ -1.53
COL3A1P02461 DYNLL1P7-201ENST00000429273 258 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.5□□□□□ -1.53
COL3A1P02461 AC006326.1-201ENST00000445465 787 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.5□□□□□ -1.53
COL3A1P02461 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL3A1P02461 EXOSC3P1-201ENST00000448649 500 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 AF213884.2-201ENST00000510417 903 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 MTCO3P27-201ENST00000514397 196 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 RNU6-334P-201ENST00000517072 102 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 AP003355.1-201ENST00000518956 587 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.5□□□□□ -1.53
COL3A1P02461 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.5□□□□□ -1.53
COL3A1P02461 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.5□□□□□ -1.53
COL3A1P02461 AC074029.2-201ENST00000551045 634 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.5□□□□□ -1.53
COL3A1P02461 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.5□□□□□ -1.53
COL3A1P02461 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.5□□□□□ -1.53
COL3A1P02461 AC021171.1-201ENST00000603137 706 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 KATNBL1P5-201ENST00000605015 517 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 MIR92B-201ENST00000607575 96 ntBASIC5.5□□□□□ -1.53
COL3A1P02461 AC009318.3-201ENST00000616916 503 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms