Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 NACA-203ENST00000454682 6629 ntTSL 5 BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 AL121949.2-201ENST00000403446 1548 ntBASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 SFTPD-AS1-201ENST00000608229 5001 ntBASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 CAP1P2-201ENST00000417455 1409 ntBASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 RBPJP2-201ENST00000618187 1444 ntBASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 NDFIP2-206ENST00000620924 2324 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 PJA2-201ENST00000361189 4889 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
VPS9D1Q9Y2B5 ZNF806-201ENST00000438300 1774 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC093311.1-201ENST00000506586 2021 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 LIMA1-216ENST00000552909 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 SNORD62.1-201ENST00000362541 86 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 RNU6-984P-201ENST00000363236 109 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 Y_RNA.277-201ENST00000364754 102 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 SUMO2P13-201ENST00000403109 272 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AL355862.1-201ENST00000412705 353 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 COX6CP10-201ENST00000416832 224 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 RPL21P38-201ENST00000418090 167 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AL050320.1-201ENST00000420044 446 ntTSL 2 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC130360.1-201ENST00000425489 1117 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 MRPS18BP2-201ENST00000434310 759 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC104698.1-201ENST00000435671 276 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 HMGN1P2-201ENST00000445197 310 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 RN7SL58P-201ENST00000473445 294 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC093267.1-201ENST00000489176 961 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 GAPDHP38-201ENST00000503632 1002 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC096754.1-201ENST00000508904 818 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC011411.1-201ENST00000509592 876 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC146944.3-201ENST00000509969 371 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 IGKV2-38-201ENST00000517443 247 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 MAL2-201ENST00000522112 573 ntTSL 4 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AP003032.1-201ENST00000526730 277 ntTSL 3 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 RN7SL25P-201ENST00000583862 260 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AL159153.1-201ENST00000619688 317 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC011592.1-201ENST00000624647 3634 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC093909.5-201ENST00000621839 1799 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 AC006213.6-201ENST00000623722 4179 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 IARS-205ENST00000443024 4341 ntTSL 5 BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 SAMMSON-203ENST00000641005 2168 ntBASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
VPS9D1Q9Y2B5 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 RMST-202ENST00000541282 2099 ntTSL 2 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC005183.1-201ENST00000603687 1979 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 LRP12-201ENST00000276654 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 FOLH1B-202ENST00000529567 2145 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 RN7SKP115-201ENST00000363177 317 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 MIR128-2-201ENST00000384893 84 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 RNU2-33P-201ENST00000410344 192 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 RNU4-46P-201ENST00000410818 138 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 GSTA6P-201ENST00000424144 582 ntBASIC7.24□□□□□ -1.25
VPS9D1Q9Y2B5 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms