Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC006960.3-201ENST00000561845 705 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 FCF1P5-201ENST00000406490 482 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC104978.1-201ENST00000449387 391 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC084757.4-201ENST00000616350 526 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL035696.2-201ENST00000407941 709 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 XIST-201ENST00000416330 750 ntTSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC063950.1-201ENST00000552036 308 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC104984.5-201ENST00000586878 94 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL133383.2-201ENST00000622958 2336 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL078604.1-201ENST00000404609 466 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 RPL7P4-203ENST00000430239 730 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AP000563.1-201ENST00000490865 758 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 NPM1P41-201ENST00000512920 831 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC068722.2-201ENST00000618734 544 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 PRDX3P3-201ENST00000447765 522 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC012671.1-201ENST00000451912 203 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 DUX4L52-201ENST00000549363 777 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 GTF2IP22-201ENST00000554443 182 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 RN7SL371P-201ENST00000578099 267 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AC091178.1-203ENST00000584586 279 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 BDH2P1-201ENST00000602288 736 ntBASIC1.21□□□□□ -2.22
SYNE1Q8NF91 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC1.21□□□□□ -2.22
SYNE1Q8NF91 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL360270.2-201ENST00000562952 5985 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC004069.2-201ENST00000505438 1114 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 SMCR2_2.1-201ENST00000619783 161 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 SOD2P1-201ENST00000396543 562 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 SNORA57.3-201ENST00000411095 141 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC017083.1-201ENST00000428093 483 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RPS11P1-201ENST00000451072 473 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC007967.1-201ENST00000455422 1159 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL136126.1-201ENST00000473603 402 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 MYL12AP1-201ENST00000518490 515 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms