Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC095038.2-201ENST00000621464 1070 ntBASIC3.53□□□□□ -1.84
CHD3Q12873 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.53□□□□□ -1.84
CHD3Q12873 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
CHD3Q12873 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.52□□□□□ -1.85
CHD3Q12873 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CHD3Q12873 MIR93-201ENST00000385024 80 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 HSPE1P12-201ENST00000412576 301 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 EIF1P3-201ENST00000423841 334 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 HMGB1P16-201ENST00000447155 540 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.52□□□□□ -1.85
CHD3Q12873 RPL38P1-201ENST00000460914 211 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CHD3Q12873 AC006499.5-201ENST00000505037 514 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 RNU6-1334P-201ENST00000516032 105 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 RN7SKP157-201ENST00000516174 282 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 MTCYBP19-201ENST00000517463 1124 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.52□□□□□ -1.85
CHD3Q12873 AC093014.1-201ENST00000548926 724 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.52□□□□□ -1.85
CHD3Q12873 AC027807.1-201ENST00000559921 996 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 AL360157.1-201ENST00000565962 87 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.52□□□□□ -1.85
CHD3Q12873 AC012417.1-201ENST00000582307 1039 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.52□□□□□ -1.85
CHD3Q12873 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CHD3Q12873 AC006971.1-201ENST00000407916 4486 ntBASIC3.52□□□□□ -1.85
CHD3Q12873 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
CHD3Q12873 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CHD3Q12873 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 RNU1-132P-201ENST00000364300 164 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 RNA5SP130-201ENST00000364431 114 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 SNORA5A-201ENST00000384111 134 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 RN7SKP156-201ENST00000410308 342 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC068533.1-201ENST00000418542 415 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 OR8F1P-201ENST00000425243 930 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC022336.1-201ENST00000475510 337 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 RPS29P19-201ENST00000479709 171 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AC106872.2-201ENST00000494303 480 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AC110768.1-201ENST00000509222 400 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 RN7SKP141-201ENST00000516167 338 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC005255.1-201ENST00000593748 216 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 VN1R92P-201ENST00000598511 928 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AC012468.1-201ENST00000604888 430 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 OTUD4P1-201ENST00000237841 3067 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 RNA5SP175-201ENST00000364275 119 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 MIR137-201ENST00000385223 102 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 MIR1179-201ENST00000408703 91 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC006064.5-201ENST00000541782 248 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 MIR5685-201ENST00000579080 79 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 AL159169.3-201ENST00000608871 561 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AC090912.3-201ENST00000609775 533 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.51□□□□□ -1.85
CHD3Q12873 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 AC078899.5-201ENST00000612475 178 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AL391261.4-201ENST00000616012 481 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AC090246.1-201ENST00000616499 426 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 AC005858.4-201ENST00000623191 700 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.51□□□□□ -1.85
CHD3Q12873 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CHD3Q12873 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC3.51□□□□□ -1.85
CHD3Q12873 AC006042.3-201ENST00000454684 1469 ntBASIC3.51□□□□□ -1.85
CHD3Q12873 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
CHD3Q12873 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.5□□□□□ -1.85
CHD3Q12873 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms