Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AC010307.1-201ENST00000467206 836 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC011037.1-201ENST00000483964 558 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC013356.1-201ENST00000489027 564 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 BTF3L4P4-201ENST00000506381 449 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 RNA5SP49-201ENST00000516450 115 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 RNU6-347P-201ENST00000516658 105 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC068020.1-201ENST00000594215 661 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AL592436.1-201ENST00000605135 558 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC010680.4-201ENST00000605334 543 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC015722.2-201ENST00000622210 551 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 AC000367.1-201ENST00000452711 1766 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 LINC00561-201ENST00000565815 2738 ntBASIC3.12□□□□□ -1.91
HIST1H1AQ02539 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HIST1H1AQ02539 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 SNORA37-201ENST00000384504 129 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 PGBD4P8-201ENST00000412993 562 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 RPL30P2-201ENST00000414021 291 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 RBMY2KP-201ENST00000418221 992 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 HMGB1P32-201ENST00000425971 565 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 RPS29P17-201ENST00000430795 166 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 USP9YP31-201ENST00000431405 881 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC011742.1-201ENST00000431448 434 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC096638.2-201ENST00000434965 711 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 RPL7AP52-201ENST00000458096 790 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC078785.3-201ENST00000476607 425 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 RPL29P14-201ENST00000495837 428 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC105233.3-201ENST00000531125 744 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC137768.1-201ENST00000549998 553 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC022655.2-201ENST00000577280 318 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 MIR3186-201ENST00000577404 85 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC020910.2-201ENST00000603635 610 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 FAM27D1-201ENST00000612308 341 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC090246.1-201ENST00000616499 426 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 MIR7703-201ENST00000620784 77 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC010809.3-201ENST00000621310 641 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 AC092628.2-201ENST00000622492 339 ntBASIC3.11□□□□□ -1.91
HIST1H1AQ02539 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIST1H1AQ02539 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 AC012618.3-205ENST00000637896 1496 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 AL118496.1-201ENST00000440201 1812 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 SNORD35B-201ENST00000363660 87 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 MTCO3P31-201ENST00000405526 789 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 RPL31P52-201ENST00000407532 367 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 RNU4-25P-201ENST00000410569 230 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 RPL23AP4-201ENST00000427757 463 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HIST1H1AQ02539 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 AC245517.2-201ENST00000442890 346 ntBASIC3.1□□□□□ -1.91
HIST1H1AQ02539 MTCO3P16-201ENST00000454456 754 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms