Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 RNU1-134P-201ENST00000362935 165 ntBASIC6.18□□□□□ -1.42
LIG3P49916 Y_RNA.402-201ENST00000383972 102 ntBASIC6.18□□□□□ -1.42
LIG3P49916 RNU6-444P-201ENST00000383988 108 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.18□□□□□ -1.42
LIG3P49916 AC016831.2-201ENST00000417179 352 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC004690.1-201ENST00000418216 328 ntBASIC6.18□□□□□ -1.42
LIG3P49916 SDCBPP2-201ENST00000424643 885 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC6.18□□□□□ -1.42
LIG3P49916 HMGN2P27-201ENST00000427352 270 ntBASIC6.18□□□□□ -1.42
LIG3P49916 BTF3P10-201ENST00000433415 495 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC010881.1-201ENST00000433830 235 ntBASIC6.18□□□□□ -1.42
LIG3P49916 LSM1P1-201ENST00000438629 273 ntBASIC6.18□□□□□ -1.42
LIG3P49916 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 AL353662.1-201ENST00000439099 327 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 AC073909.1-201ENST00000447112 999 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC6.18□□□□□ -1.42
LIG3P49916 MTCO1P27-201ENST00000448269 226 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC002553.3-201ENST00000453002 341 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC005229.2-201ENST00000456995 399 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC068228.1-201ENST00000461723 211 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC092757.1-201ENST00000467293 467 ntBASIC6.18□□□□□ -1.42
LIG3P49916 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC6.18□□□□□ -1.42
LIG3P49916 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC6.18□□□□□ -1.42
LIG3P49916 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.18□□□□□ -1.42
LIG3P49916 TBCA-203ENST00000517679 545 ntTSL 3 BASIC6.18□□□□□ -1.42
LIG3P49916 IGKV3D-25-201ENST00000519599 235 ntBASIC6.18□□□□□ -1.42
LIG3P49916 TPM3P3-201ENST00000521343 354 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AP001893.2-201ENST00000526949 202 ntBASIC6.18□□□□□ -1.42
LIG3P49916 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC6.18□□□□□ -1.42
LIG3P49916 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 AL359219.2-201ENST00000555184 348 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.18□□□□□ -1.42
LIG3P49916 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.18□□□□□ -1.42
LIG3P49916 MIR3682-201ENST00000581338 84 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC005730.3-201ENST00000583067 366 ntBASIC6.18□□□□□ -1.42
LIG3P49916 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC6.18□□□□□ -1.42
LIG3P49916 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC6.18□□□□□ -1.42
LIG3P49916 AC092266.1-201ENST00000610958 165 ntBASIC6.18□□□□□ -1.42
LIG3P49916 Six3os1_2.1-201ENST00000616963 217 ntBASIC6.18□□□□□ -1.42
LIG3P49916 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
LIG3P49916 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC6.18□□□□□ -1.42
LIG3P49916 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.18□□□□□ -1.42
LIG3P49916 AP001541.1-201ENST00000623322 1904 ntBASIC6.18□□□□□ -1.42
LIG3P49916 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.18□□□□□ -1.42
LIG3P49916 FARSBP1-201ENST00000435808 1778 ntBASIC6.18□□□□□ -1.42
LIG3P49916 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
LIG3P49916 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.18□□□□□ -1.42
LIG3P49916 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 MTND4P29-201ENST00000503122 1372 ntBASIC6.18□□□□□ -1.42
LIG3P49916 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIG3P49916 MFSD8-219ENST00000641228 2559 ntBASIC6.17□□□□□ -1.42
LIG3P49916 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
LIG3P49916 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
LIG3P49916 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
LIG3P49916 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.17□□□□□ -1.42
LIG3P49916 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
LIG3P49916 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.17□□□□□ -1.42
LIG3P49916 Y_RNA.573-201ENST00000384763 105 ntBASIC6.17□□□□□ -1.42
LIG3P49916 MIR130B-202ENST00000385018 82 ntBASIC6.17□□□□□ -1.42
LIG3P49916 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC6.17□□□□□ -1.42
LIG3P49916 MIR1305-201ENST00000408300 86 ntBASIC6.17□□□□□ -1.42
LIG3P49916 RN7SKP240-201ENST00000410583 375 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC009237.5-201ENST00000414271 501 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC079809.1-201ENST00000415468 276 ntBASIC6.17□□□□□ -1.42
LIG3P49916 MTATP6P27-201ENST00000416987 621 ntBASIC6.17□□□□□ -1.42
LIG3P49916 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.17□□□□□ -1.42
LIG3P49916 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
LIG3P49916 ELOCP14-201ENST00000428070 331 ntBASIC6.17□□□□□ -1.42
LIG3P49916 NPM1P18-201ENST00000434232 732 ntBASIC6.17□□□□□ -1.42
LIG3P49916 PPIAP13-201ENST00000434706 478 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AL451074.3-201ENST00000437709 472 ntBASIC6.17□□□□□ -1.42
LIG3P49916 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 ELOCP7-201ENST00000439968 331 ntBASIC6.17□□□□□ -1.42
LIG3P49916 MTND6P13-201ENST00000443510 523 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 OR6K1P-201ENST00000456766 971 ntBASIC6.17□□□□□ -1.42
LIG3P49916 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC6.17□□□□□ -1.42
LIG3P49916 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 FAM172BP-201ENST00000487497 1089 ntBASIC6.17□□□□□ -1.42
LIG3P49916 TRBV5-2-201ENST00000489095 273 ntBASIC6.17□□□□□ -1.42
LIG3P49916 RPSAP51-201ENST00000497462 645 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC112204.1-201ENST00000502591 103 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.17□□□□□ -1.42
LIG3P49916 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms