Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RANP7-201ENST00000418085 644 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC073063.1-201ENST00000434352 607 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 HMGB1P37-201ENST00000439613 609 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 RPSAP41-201ENST00000439695 860 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.62□□□□□ -1.67
BRCA1P38398 RN7SL271P-201ENST00000487601 295 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.62□□□□□ -1.67
BRCA1P38398 RANP9-201ENST00000519957 271 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.62□□□□□ -1.67
BRCA1P38398 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.62□□□□□ -1.67
BRCA1P38398 AC069240.1-201ENST00000548774 375 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.62□□□□□ -1.67
BRCA1P38398 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.62□□□□□ -1.67
BRCA1P38398 AC006363.1-201ENST00000603806 463 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC006077.1-201ENST00000604746 343 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AL161912.3-201ENST00000605404 628 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.62□□□□□ -1.67
BRCA1P38398 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.62□□□□□ -1.67
BRCA1P38398 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
BRCA1P38398 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
BRCA1P38398 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
BRCA1P38398 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.62□□□□□ -1.67
BRCA1P38398 DBIP2-201ENST00000419076 262 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 HSPE1P16-201ENST00000426640 348 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC073335.1-201ENST00000427776 363 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC087650.1-201ENST00000431445 468 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 RPL21P110-201ENST00000433345 446 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.62□□□□□ -1.67
BRCA1P38398 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC4.62□□□□□ -1.67
BRCA1P38398 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.62□□□□□ -1.67
BRCA1P38398 AC093663.1-201ENST00000497190 394 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.62□□□□□ -1.67
BRCA1P38398 ASNSP4-201ENST00000511103 447 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.62□□□□□ -1.67
BRCA1P38398 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.62□□□□□ -1.67
BRCA1P38398 OR7E13P-201ENST00000526052 910 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AC103843.2-201ENST00000530523 682 ntBASIC4.62□□□□□ -1.67
BRCA1P38398 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.62□□□□□ -1.67
BRCA1P38398 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
BRCA1P38398 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
BRCA1P38398 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.61□□□□□ -1.67
BRCA1P38398 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
BRCA1P38398 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
BRCA1P38398 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.61□□□□□ -1.67
BRCA1P38398 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
BRCA1P38398 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
BRCA1P38398 OR10J6P-201ENST00000289731 930 ntBASIC4.61□□□□□ -1.67
BRCA1P38398 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.61□□□□□ -1.67
BRCA1P38398 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.61□□□□□ -1.67
BRCA1P38398 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.61□□□□□ -1.67
BRCA1P38398 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.61□□□□□ -1.67
BRCA1P38398 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.61□□□□□ -1.67
BRCA1P38398 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.61□□□□□ -1.67
BRCA1P38398 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.61□□□□□ -1.67
BRCA1P38398 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.61□□□□□ -1.67
BRCA1P38398 SCARNA15.3-201ENST00000626315 122 ntBASIC4.61□□□□□ -1.67
BRCA1P38398 SCARNA4.1-201ENST00000628597 123 ntBASIC4.61□□□□□ -1.67
BRCA1P38398 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
BRCA1P38398 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
BRCA1P38398 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.61□□□□□ -1.67
BRCA1P38398 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.61□□□□□ -1.67
BRCA1P38398 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
BRCA1P38398 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
BRCA1P38398 RPL7P44-201ENST00000424827 742 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 RPL21P11-201ENST00000461458 483 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 RPL7P23-201ENST00000493874 747 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC4.6□□□□□ -1.67
BRCA1P38398 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.6□□□□□ -1.67
BRCA1P38398 MIR5186-201ENST00000577504 120 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 AC110801.1-201ENST00000623590 212 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.6□□□□□ -1.67
BRCA1P38398 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
BRCA1P38398 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
BRCA1P38398 MFSD8-236ENST00000641509 4050 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
BRCA1P38398 AL034403.1-201ENST00000399414 885 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 RNU2-22P-201ENST00000411266 212 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.6□□□□□ -1.67
BRCA1P38398 AC111000.5-201ENST00000506559 1178 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.6□□□□□ -1.67
BRCA1P38398 LSM1P2-201ENST00000604911 322 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 AC119674.1-212ENST00000641155 993 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms