Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SCN4AP35499 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.62□□□□□ -1.67
SCN4AP35499 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.62□□□□□ -1.67
SCN4AP35499 AL591623.2-201ENST00000449978 222 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 AC017007.3-201ENST00000479865 435 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.62□□□□□ -1.67
SCN4AP35499 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.62□□□□□ -1.67
SCN4AP35499 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.62□□□□□ -1.67
SCN4AP35499 AC022968.1-201ENST00000567372 442 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.62□□□□□ -1.67
SCN4AP35499 AL354760.1-201ENST00000608357 643 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.62□□□□□ -1.67
SCN4AP35499 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.62□□□□□ -1.67
SCN4AP35499 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SCN4AP35499 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
SCN4AP35499 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC4.62□□□□□ -1.67
SCN4AP35499 MAPK10-320ENST00000641462 6696 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SCN4AP35499 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SCN4AP35499 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SCN4AP35499 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SCN4AP35499 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SCN4AP35499 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SCN4AP35499 U3.26-201ENST00000391236 204 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 AL121834.1-202ENST00000404494 277 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.61□□□□□ -1.67
SCN4AP35499 AC006994.1-201ENST00000438212 839 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.61□□□□□ -1.67
SCN4AP35499 AC010469.1-201ENST00000463864 576 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 RPL5P16-201ENST00000471467 790 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 RPL32P34-201ENST00000486380 400 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 STMN1P2-201ENST00000508435 439 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.61□□□□□ -1.67
SCN4AP35499 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.61□□□□□ -1.67
SCN4AP35499 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.61□□□□□ -1.67
SCN4AP35499 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.61□□□□□ -1.67
SCN4AP35499 MIR4325-201ENST00000583049 90 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.61□□□□□ -1.67
SCN4AP35499 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.61□□□□□ -1.67
SCN4AP35499 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SCN4AP35499 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.61□□□□□ -1.67
SCN4AP35499 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SCN4AP35499 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SCN4AP35499 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.61□□□□□ -1.67
SCN4AP35499 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
SCN4AP35499 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SCN4AP35499 RNA5SP120-201ENST00000410900 112 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 AC108022.1-201ENST00000493466 478 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 MYL12AP1-201ENST00000518490 515 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 HIGD1AP18-201ENST00000520730 278 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.6□□□□□ -1.67
SCN4AP35499 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
SCN4AP35499 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SCN4AP35499 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SCN4AP35499 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.6□□□□□ -1.67
SCN4AP35499 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SCN4AP35499 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SCN4AP35499 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
SCN4AP35499 GNG5P1-201ENST00000255500 204 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 RNA5SP50-201ENST00000363731 107 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.6□□□□□ -1.67
SCN4AP35499 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SCN4AP35499 OR6K3-202ENST00000368146 996 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 BMS1P3-201ENST00000372011 932 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 AC096644.3-201ENST00000416788 338 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC4.6□□□□□ -1.67
SCN4AP35499 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.6□□□□□ -1.67
SCN4AP35499 AC005019.1-201ENST00000436455 431 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.6□□□□□ -1.67
SCN4AP35499 AC073387.1-201ENST00000453261 709 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 APOOP2-201ENST00000461561 539 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.6□□□□□ -1.67
SCN4AP35499 AC022695.1-201ENST00000522089 237 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.6□□□□□ -1.67
SCN4AP35499 AP005205.1-201ENST00000563503 508 ntBASIC4.6□□□□□ -1.67
SCN4AP35499 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.6□□□□□ -1.67
SCN4AP35499 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.6□□□□□ -1.67
SCN4AP35499 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.59□□□□□ -1.67
SCN4AP35499 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.59□□□□□ -1.67
SCN4AP35499 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SCN4AP35499 Y_RNA.510-201ENST00000384511 114 ntBASIC4.59□□□□□ -1.67
SCN4AP35499 MIR199A2-201ENST00000385289 110 ntBASIC4.59□□□□□ -1.67
SCN4AP35499 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.59□□□□□ -1.67
SCN4AP35499 Z74696.2-201ENST00000436514 498 ntBASIC4.59□□□□□ -1.67
SCN4AP35499 AC092641.1-201ENST00000440229 772 ntBASIC4.59□□□□□ -1.67
SCN4AP35499 UBDP1-202ENST00000457888 382 ntBASIC4.59□□□□□ -1.67
SCN4AP35499 RPL7P24-201ENST00000493052 752 ntBASIC4.59□□□□□ -1.67
SCN4AP35499 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SCN4AP35499 AL513477.2-201ENST00000607858 568 ntBASIC4.59□□□□□ -1.67
SCN4AP35499 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SCN4AP35499 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SCN4AP35499 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.58□□□□□ -1.68
SCN4AP35499 RHOT1P2-201ENST00000366423 333 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.58□□□□□ -1.68
SCN4AP35499 AC127537.2-201ENST00000439258 465 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms