Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MIR6798-201ENST00000612887 67 ntBASIC4.05□□□□□ -1.76
SHMT2P34897 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.05□□□□□ -1.76
SHMT2P34897 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.05□□□□□ -1.76
SHMT2P34897 MIR492-201ENST00000638676 116 ntBASIC4.05□□□□□ -1.76
SHMT2P34897 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
SHMT2P34897 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
SHMT2P34897 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
SHMT2P34897 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
SHMT2P34897 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SHMT2P34897 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SHMT2P34897 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SHMT2P34897 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.04□□□□□ -1.76
SHMT2P34897 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SHMT2P34897 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SHMT2P34897 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SHMT2P34897 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SHMT2P34897 RNU6-31P-201ENST00000384388 108 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.04□□□□□ -1.76
SHMT2P34897 RN7SKP33-201ENST00000410942 340 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 RPL26P37-201ENST00000411983 438 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 BTF3P9-201ENST00000418784 283 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.04□□□□□ -1.76
SHMT2P34897 RWDD4P2-201ENST00000426392 563 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.04□□□□□ -1.76
SHMT2P34897 MRPL50P1-201ENST00000431951 384 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 RPS20P1-201ENST00000434853 354 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 AL157827.1-201ENST00000447622 132 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.04□□□□□ -1.76
SHMT2P34897 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.04□□□□□ -1.76
SHMT2P34897 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.04□□□□□ -1.76
SHMT2P34897 AL133477.1-201ENST00000457472 514 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 RPL36AP13-201ENST00000457490 317 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 RPL23AP71-201ENST00000470966 469 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 RPL23AP2-201ENST00000471227 466 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.04□□□□□ -1.76
SHMT2P34897 RWDD4P1-201ENST00000488019 565 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 RN7SL604P-201ENST00000492589 296 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 AC021087.2-201ENST00000504656 1203 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 AC017037.1-201ENST00000508460 471 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 AC016550.3-201ENST00000515706 767 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 RNU6-362P-201ENST00000516736 90 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 VTA1P2-201ENST00000520205 911 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.04□□□□□ -1.76
SHMT2P34897 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SHMT2P34897 AC135803.1-201ENST00000608748 565 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 AC008785.1-201ENST00000624475 456 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 AC010608.2-201ENST00000624830 470 ntBASIC4.04□□□□□ -1.76
SHMT2P34897 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
SHMT2P34897 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
SHMT2P34897 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
SHMT2P34897 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
SHMT2P34897 Z82217.1-201ENST00000625157 8149 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
SHMT2P34897 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
SHMT2P34897 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.03□□□□□ -1.76
SHMT2P34897 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
SHMT2P34897 AL121657.1-201ENST00000327215 531 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SHMT2P34897 ENSAP1-201ENST00000392855 326 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 AC136624.1-201ENST00000400791 413 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 AL590623.1-201ENST00000427864 105 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.03□□□□□ -1.76
SHMT2P34897 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 CASP3P1-201ENST00000446037 609 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.03□□□□□ -1.76
SHMT2P34897 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.03□□□□□ -1.76
SHMT2P34897 RAD23BP3-201ENST00000454157 1152 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 RN7SL585P-201ENST00000470538 280 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.03□□□□□ -1.76
SHMT2P34897 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.03□□□□□ -1.76
SHMT2P34897 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.03□□□□□ -1.76
SHMT2P34897 MTCO1P35-201ENST00000515270 228 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 MIR2116-201ENST00000517221 80 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.03□□□□□ -1.76
SHMT2P34897 AC026616.1-201ENST00000523157 525 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.03□□□□□ -1.76
SHMT2P34897 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.03□□□□□ -1.76
SHMT2P34897 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.03□□□□□ -1.76
SHMT2P34897 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.03□□□□□ -1.76
SHMT2P34897 AL359715.5-201ENST00000623431 443 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 AC138907.10-201ENST00000623708 983 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 OR5AC4P-202ENST00000642086 985 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.03□□□□□ -1.76
SHMT2P34897 AL592437.2-201ENST00000421655 2434 ntBASIC4.03□□□□□ -1.76
SHMT2P34897 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SHMT2P34897 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.03□□□□□ -1.76
SHMT2P34897 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.03□□□□□ -1.77
SHMT2P34897 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.03□□□□□ -1.77
SHMT2P34897 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.03□□□□□ -1.77
SHMT2P34897 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SHMT2P34897 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms