Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
MSX1P28360 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
MSX1P28360 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX1P28360 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX1P28360 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX1P28360 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
MSX1P28360 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX1P28360 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 AC034111.1-201ENST00000562143 3770 ntBASIC6.28□□□□□ -1.4
MSX1P28360 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX1P28360 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.28□□□□□ -1.4
MSX1P28360 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX1P28360 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
MSX1P28360 RNA5SP394-201ENST00000364216 119 ntBASIC6.28□□□□□ -1.4
MSX1P28360 Y_RNA.527-201ENST00000384573 102 ntBASIC6.28□□□□□ -1.4
MSX1P28360 Y_RNA.574-201ENST00000384766 95 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AL606923.1-201ENST00000406616 190 ntBASIC6.28□□□□□ -1.4
MSX1P28360 MIR548I3-201ENST00000408378 149 ntBASIC6.28□□□□□ -1.4
MSX1P28360 MIR548I1-201ENST00000408810 149 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RNA5SP345-201ENST00000410646 108 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RN7SKP91-201ENST00000410852 288 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RN7SKP205-201ENST00000410999 307 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RPSAP60-201ENST00000415403 880 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AC018865.2-201ENST00000423631 129 ntBASIC6.28□□□□□ -1.4
MSX1P28360 FABP7P2-201ENST00000429946 379 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX1P28360 OR4K11P-201ENST00000431829 904 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RPS26P40-201ENST00000435209 294 ntBASIC6.28□□□□□ -1.4
MSX1P28360 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX1P28360 AL445991.1-201ENST00000450381 475 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RPS4XP14-201ENST00000493072 781 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RN7SL143P-201ENST00000496780 297 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RNU6-566P-201ENST00000516790 107 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RNU6-388P-201ENST00000517012 105 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RNU6-389P-201ENST00000517048 105 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RN7SKP183-201ENST00000517169 324 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX1P28360 AP003497.1-201ENST00000528472 562 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX1P28360 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC6.28□□□□□ -1.4
MSX1P28360 MTCO3P23-201ENST00000561363 289 ntBASIC6.28□□□□□ -1.4
MSX1P28360 TVP23CP2-201ENST00000571473 623 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RN7SL199P-201ENST00000578752 281 ntBASIC6.28□□□□□ -1.4
MSX1P28360 OR4K8P-201ENST00000578842 1048 ntBASIC6.28□□□□□ -1.4
MSX1P28360 RN7SL656P-201ENST00000579044 281 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX1P28360 RN7SL404P-201ENST00000582421 281 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AC005357.1-201ENST00000588399 301 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX1P28360 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX1P28360 AC020914.7-201ENST00000594477 545 ntBASIC6.28□□□□□ -1.4
MSX1P28360 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX1P28360 PRR13P7-201ENST00000605538 430 ntBASIC6.28□□□□□ -1.4
MSX1P28360 MIR6849-201ENST00000618543 69 ntBASIC6.28□□□□□ -1.4
MSX1P28360 OR52H1-202ENST00000641796 1061 ntBASIC6.28□□□□□ -1.4
MSX1P28360 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX1P28360 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 AL359195.2-201ENST00000623657 4412 ntBASIC6.28□□□□□ -1.4
MSX1P28360 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 AC003973.3-201ENST00000624863 2822 ntBASIC6.28□□□□□ -1.4
MSX1P28360 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX1P28360 TCP11X1-202ENST00000622971 1372 ntBASIC6.28□□□□□ -1.4
MSX1P28360 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX1P28360 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX1P28360 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
MSX1P28360 SPATA31C2-201ENST00000324915 3777 ntBASIC6.28□□□□□ -1.4
MSX1P28360 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
MSX1P28360 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX1P28360 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 CASC19-204ENST00000641001 2055 ntBASIC6.27□□□□□ -1.41
MSX1P28360 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC6.27□□□□□ -1.41
MSX1P28360 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC6.27□□□□□ -1.41
MSX1P28360 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
MSX1P28360 RPL32P3-201ENST00000359025 275 ntBASIC6.27□□□□□ -1.41
MSX1P28360 RN7SKP189-201ENST00000365042 330 ntBASIC6.27□□□□□ -1.41
MSX1P28360 RNU6-444P-201ENST00000383988 108 ntBASIC6.27□□□□□ -1.41
MSX1P28360 Y_RNA.556-201ENST00000384677 113 ntBASIC6.27□□□□□ -1.41
MSX1P28360 MIR454-201ENST00000390180 115 ntBASIC6.27□□□□□ -1.41
MSX1P28360 RPL9P21-201ENST00000392269 505 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms