Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.65□□□□□ -1.67
COL5A3P25940 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A3P25940 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A3P25940 MAPK10-303ENST00000641324 3959 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A3P25940 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A3P25940 SNORD17-201ENST00000390930 237 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.64□□□□□ -1.67
COL5A3P25940 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.64□□□□□ -1.67
COL5A3P25940 AC087650.1-201ENST00000431445 468 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 VN1R25P-201ENST00000443385 738 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.64□□□□□ -1.67
COL5A3P25940 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.64□□□□□ -1.67
COL5A3P25940 VN1R40P-201ENST00000455196 941 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.64□□□□□ -1.67
COL5A3P25940 AL049873.1-201ENST00000480540 376 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 AC017037.1-201ENST00000508460 471 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.64□□□□□ -1.67
COL5A3P25940 BTG4P1-201ENST00000510421 183 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 PPBPP1-201ENST00000510807 373 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 AC103843.2-201ENST00000530523 682 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.64□□□□□ -1.67
COL5A3P25940 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.64□□□□□ -1.67
COL5A3P25940 AC010591.1-201ENST00000603941 649 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 AC115621.1-201ENST00000604653 858 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL5A3P25940 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
COL5A3P25940 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A3P25940 AC118273.1-201ENST00000525324 3006 ntBASIC4.64□□□□□ -1.67
COL5A3P25940 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A3P25940 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.63□□□□□ -1.67
COL5A3P25940 HMGB3P20-201ENST00000417997 600 ntBASIC4.63□□□□□ -1.67
COL5A3P25940 AL035458.1-201ENST00000433096 585 ntBASIC4.63□□□□□ -1.67
COL5A3P25940 KCTD9P3-201ENST00000434597 1169 ntBASIC4.63□□□□□ -1.67
COL5A3P25940 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A3P25940 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A3P25940 AC025518.1-201ENST00000479856 347 ntBASIC4.63□□□□□ -1.67
COL5A3P25940 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A3P25940 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A3P25940 MIR5186-201ENST00000577504 120 ntBASIC4.63□□□□□ -1.67
COL5A3P25940 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A3P25940 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC4.63□□□□□ -1.67
COL5A3P25940 AC125336.1-201ENST00000508893 2827 ntBASIC4.63□□□□□ -1.67
COL5A3P25940 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
COL5A3P25940 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
COL5A3P25940 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A3P25940 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A3P25940 RPL12P18-201ENST00000437175 325 ntBASIC4.63□□□□□ -1.67
COL5A3P25940 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A3P25940 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.63□□□□□ -1.67
COL5A3P25940 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A3P25940 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A3P25940 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.63□□□□□ -1.67
COL5A3P25940 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A3P25940 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.62□□□□□ -1.67
COL5A3P25940 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.67
COL5A3P25940 AC139426.3-201ENST00000605648 2059 ntBASIC4.62□□□□□ -1.67
COL5A3P25940 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A3P25940 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
COL5A3P25940 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A3P25940 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
COL5A3P25940 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
COL5A3P25940 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.62□□□□□ -1.67
COL5A3P25940 RNU2-27P-201ENST00000516185 142 ntBASIC4.62□□□□□ -1.67
COL5A3P25940 CYP4A43P-201ENST00000568156 121 ntBASIC4.62□□□□□ -1.67
COL5A3P25940 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.62□□□□□ -1.67
COL5A3P25940 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.62□□□□□ -1.67
COL5A3P25940 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 AC093535.2-201ENST00000624769 2326 ntBASIC4.62□□□□□ -1.67
COL5A3P25940 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A3P25940 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A3P25940 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A3P25940 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A3P25940 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.61□□□□□ -1.67
COL5A3P25940 RNA5SP306-201ENST00000411087 107 ntBASIC4.61□□□□□ -1.67
COL5A3P25940 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.61□□□□□ -1.67
COL5A3P25940 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.61□□□□□ -1.67
COL5A3P25940 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.61□□□□□ -1.67
COL5A3P25940 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.61□□□□□ -1.67
COL5A3P25940 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.61□□□□□ -1.67
COL5A3P25940 AC016550.3-201ENST00000515706 767 ntBASIC4.61□□□□□ -1.67
COL5A3P25940 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.61□□□□□ -1.67
COL5A3P25940 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.61□□□□□ -1.67
COL5A3P25940 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms