Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SNORA37-201ENST00000384504 129 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
CLDN9O95484 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.02□□□□□ -1.77
CLDN9O95484 AC091390.1-201ENST00000433904 331 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 AL162388.1-201ENST00000450912 352 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 HMGB3P21-201ENST00000452483 547 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 RPL36AP13-201ENST00000457490 317 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 AC010683.1-201ENST00000473673 378 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 RN7SL481P-201ENST00000477764 299 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 VWA8P1-201ENST00000510889 176 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 C1GALT1P3-201ENST00000522049 819 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 AC090819.1-201ENST00000523800 1111 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 AC105233.3-201ENST00000531125 744 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.02□□□□□ -1.77
CLDN9O95484 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.02□□□□□ -1.77
CLDN9O95484 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.02□□□□□ -1.77
CLDN9O95484 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 AC008638.3-201ENST00000603341 463 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 AL356218.2-201ENST00000605264 187 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 MIR7641-1-201ENST00000627518 61 ntBASIC4.02□□□□□ -1.77
CLDN9O95484 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.02□□□□□ -1.77
CLDN9O95484 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.02□□□□□ -1.77
CLDN9O95484 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.02□□□□□ -1.77
CLDN9O95484 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.02□□□□□ -1.77
CLDN9O95484 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLDN9O95484 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.02□□□□□ -1.77
CLDN9O95484 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CLDN9O95484 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.01□□□□□ -1.77
CLDN9O95484 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.01□□□□□ -1.77
CLDN9O95484 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 OR4K17-201ENST00000315543 1032 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 RNA5SP502-201ENST00000362694 119 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 Z86062.1-201ENST00000406773 777 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 RNU4-25P-201ENST00000410569 230 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 RN7SKP182-201ENST00000410772 298 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 PGBD4P8-201ENST00000412993 562 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 AL590623.1-201ENST00000427864 105 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 ACTR3P2-201ENST00000439585 1257 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 CBX1P1-201ENST00000440184 427 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AL353748.1-201ENST00000440753 474 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.01□□□□□ -1.77
CLDN9O95484 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.01□□□□□ -1.77
CLDN9O95484 MTND3P4-201ENST00000453537 303 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 AC011276.1-201ENST00000469688 323 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AC068587.1-201ENST00000483613 781 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AF213884.1-201ENST00000488102 463 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AC025674.1-201ENST00000507074 324 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.01□□□□□ -1.77
CLDN9O95484 IGKV2-38-201ENST00000517443 247 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 VTA1P2-201ENST00000520205 911 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.01□□□□□ -1.77
CLDN9O95484 NOP56P3-201ENST00000549457 385 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 PSMB7P1-201ENST00000556349 514 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.01□□□□□ -1.77
CLDN9O95484 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.01□□□□□ -1.77
CLDN9O95484 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 AL023583.1-201ENST00000607518 1143 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AL355816.1-201ENST00000607951 118 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AL096803.3-201ENST00000609032 532 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AC110792.4-201ENST00000609843 298 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 CR589904.2-201ENST00000612533 440 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 MIR7973-1-201ENST00000614683 76 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AC123768.4-201ENST00000616244 701 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 AP006248.2-201ENST00000623309 592 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.01□□□□□ -1.77
CLDN9O95484 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.01□□□□□ -1.77
CLDN9O95484 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CLDN9O95484 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 ERCC6-202ENST00000374127 1782 ntBASIC4.01□□□□□ -1.77
CLDN9O95484 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
CLDN9O95484 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CLDN9O95484 AC074029.4-201ENST00000624796 1859 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms