Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 SNORA31.9-201ENST00000516429 84 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 CIR1P1-201ENST00000524055 1133 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AP002812.4-201ENST00000532139 286 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 PARP1P2-201ENST00000556806 195 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AC018618.2-201ENST00000604770 446 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AP001033.2-201ENST00000609701 1003 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 AC020923.1-201ENST00000624021 917 ntBASIC4.25□□□□□ -1.73
LHX3Q9UBR4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
LHX3Q9UBR4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC090971.4-201ENST00000560291 1800 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 RNU6-252P-201ENST00000363232 107 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 LINC01347-201ENST00000417964 355 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 SEC63P1-201ENST00000425785 1258 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AL158073.1-201ENST00000426848 1104 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 RPL23AP73-201ENST00000492507 471 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC111193.1-201ENST00000504097 155 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 MTND3P24-201ENST00000506306 329 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 TCP11X3P-202ENST00000514289 1254 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 SNORA76.2-201ENST00000517095 137 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 NPM1P6-201ENST00000521088 871 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC124068.1-201ENST00000563131 678 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 MIR7151-201ENST00000617477 60 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AP006248.3-201ENST00000623580 594 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 AC116563.2-201ENST00000624751 535 ntBASIC4.24□□□□□ -1.73
LHX3Q9UBR4 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LHX3Q9UBR4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC011155.1-201ENST00000316512 456 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 RNU6-650P-201ENST00000365658 111 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 SNORA70C-201ENST00000384538 135 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 RNU6-146P-201ENST00000384602 108 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 OR8G2P-201ENST00000412796 908 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 RPS20P1-201ENST00000434853 354 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 RPL23AP46-201ENST00000438548 490 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 ELOCP3-201ENST00000439303 348 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AL353093.1-201ENST00000441292 436 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC097499.1-201ENST00000444277 208 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 GEMIN8P3-201ENST00000445417 720 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC092685.1-201ENST00000447960 1243 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC104687.1-201ENST00000485829 412 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC093824.1-201ENST00000508796 343 ntBASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.23□□□□□ -1.73
LHX3Q9UBR4 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms