Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS39Q96JC1 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
VPS39Q96JC1 HSPA8P19-201ENST00000505359 1517 ntBASIC4.36□□□□□ -1.71
VPS39Q96JC1 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS39Q96JC1 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS39Q96JC1 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS39Q96JC1 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 METTL21EP-201ENST00000298105 713 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 RNA5SP52-201ENST00000362448 134 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 RNU6-40P-201ENST00000384254 107 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS39Q96JC1 EIF1P3-201ENST00000423841 334 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AL590623.1-201ENST00000427864 105 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 USP9YP7-201ENST00000436723 430 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC114878.1-201ENST00000441166 358 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 ARL5AP2-201ENST00000444698 533 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 EIF2S2P2-201ENST00000447161 982 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 USP9YP32-201ENST00000452432 430 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC053481.1-201ENST00000467217 306 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 ATP1B1P1-201ENST00000509767 915 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 SNORA31.13-201ENST00000516624 135 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 IFITM8P-201ENST00000522529 394 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC026616.1-201ENST00000523157 525 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 HAUS1P3-201ENST00000523909 662 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC025260.1-201ENST00000548858 430 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC090751.1-201ENST00000566966 267 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC005242.1-201ENST00000585658 438 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC068790.7-201ENST00000602347 528 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC100814.1-201ENST00000606963 623 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AL161616.1-201ENST00000611867 286 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 AC003001.2-201ENST00000616294 831 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 FP325313.1-201ENST00000638228 703 ntBASIC4.35□□□□□ -1.71
VPS39Q96JC1 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS39Q96JC1 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS39Q96JC1 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS39Q96JC1 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS39Q96JC1 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS39Q96JC1 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 RNU1-130P-201ENST00000363930 160 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 SNORD66.1-201ENST00000391230 76 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 RNU2-6P-201ENST00000411404 190 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 RPL7AP25-201ENST00000423357 805 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC069285.2-201ENST00000440210 275 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 PPIAP3-201ENST00000450588 505 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 AL121877.1-201ENST00000453704 622 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 TPRKBP1-201ENST00000456243 481 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 RPS20P4-201ENST00000461659 355 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 RPL37P6-202ENST00000464216 403 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 RPL21P71-201ENST00000465598 459 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 OR52A4P-202ENST00000481634 799 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 RN7SKP234-201ENST00000517173 224 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 MYL12AP1-201ENST00000518490 515 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC079587.1-201ENST00000603846 277 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 AC113194.1-201ENST00000606037 500 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 MIR6780A-201ENST00000615089 68 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 MIR6864-201ENST00000617935 70 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 AL713922.2-201ENST00000619384 716 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 NMD3P1-201ENST00000439704 1488 ntBASIC4.34□□□□□ -1.71
VPS39Q96JC1 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS39Q96JC1 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS39Q96JC1 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.72
VPS39Q96JC1 AC025031.4-201ENST00000621248 3271 ntBASIC4.34□□□□□ -1.72
VPS39Q96JC1 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 360.2 ms