Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXA1P55317 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA1P55317 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.68□□□□□ -1.82
FOXA1P55317 RPL21P11-201ENST00000461458 483 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 RN7SL385P-201ENST00000468873 276 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 AC110792.1-201ENST00000491826 472 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 RFPL4AP3-201ENST00000515267 345 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 RN7SKP83-201ENST00000516512 178 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 AC008802.1-201ENST00000519121 791 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 KCTD9P6-201ENST00000522306 950 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 AC090312.1-201ENST00000580637 348 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXA1P55317 AC083809.1-201ENST00000615051 472 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 MIR492-201ENST00000638676 116 ntBASIC3.68□□□□□ -1.82
FOXA1P55317 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.68□□□□□ -1.82
FOXA1P55317 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
FOXA1P55317 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
FOXA1P55317 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA1P55317 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXA1P55317 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
FOXA1P55317 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
FOXA1P55317 SOD2P1-201ENST00000396543 562 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AL022722.2-201ENST00000402519 180 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AL034379.1-201ENST00000423216 253 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 TPT1P12-201ENST00000448968 492 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.67□□□□□ -1.82
FOXA1P55317 DNAJC19P1-201ENST00000455312 319 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 RPL7P19-201ENST00000469948 618 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 RPS3AP6-201ENST00000484430 795 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AC108941.1-201ENST00000502853 530 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 RNU6-352P-201ENST00000516908 107 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AC022695.1-201ENST00000522089 237 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AC090281.1-201ENST00000523019 276 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AL121576.1-201ENST00000556055 276 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AC015726.1-201ENST00000602353 681 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 AL592436.1-201ENST00000605135 558 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXA1P55317 AL645927.2-201ENST00000618350 349 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 MIR6758-201ENST00000620653 63 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 MIR6500-201ENST00000622700 86 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
FOXA1P55317 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXA1P55317 CR382285.2-201ENST00000624662 1495 ntBASIC3.67□□□□□ -1.82
FOXA1P55317 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXA1P55317 AC026951.1-201ENST00000559530 2459 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 MOB1AP1-201ENST00000430903 535 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 NDUFB1P1-201ENST00000435191 180 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXA1P55317 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 RPL5P32-201ENST00000454085 879 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 AL672167.3-201ENST00000465951 960 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 PRELID3BP5-201ENST00000508612 460 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 RN7SKP209-201ENST00000516888 304 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.66□□□□□ -1.82
FOXA1P55317 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC3.66□□□□□ -1.82
FOXA1P55317 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.66□□□□□ -1.82
FOXA1P55317 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.66□□□□□ -1.82
FOXA1P55317 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA1P55317 SNORA62.6-201ENST00000606322 83 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 AC112484.5-201ENST00000624189 228 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 AC244205.2-202ENST00000635781 342 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 OR6C71P-202ENST00000641886 1107 ntBASIC3.66□□□□□ -1.82
FOXA1P55317 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.66□□□□□ -1.82
FOXA1P55317 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.66□□□□□ -1.82
FOXA1P55317 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
FOXA1P55317 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
FOXA1P55317 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
FOXA1P55317 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
FOXA1P55317 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.65□□□□□ -1.82
FOXA1P55317 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
FOXA1P55317 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.65□□□□□ -1.82
FOXA1P55317 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
FOXA1P55317 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA1P55317 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
FOXA1P55317 RPL32P3-201ENST00000359025 275 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms